PDB entry 3by0

View 3by0 on RCSB PDB site
Description: Crystal structure of Siderocalin (NGAL, Lipocalin 2) W79A-R81A complexed with Ferric Enterobactin
Class: ligand binding protein
Keywords: beta barrel, ligand binding protein
Deposited on 2008-01-15, released 2008-09-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.57 Å
R-factor: 0.249
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Neutrophil gelatinase-associated lipocalin
    Species: HOMO SAPIENS
    Gene: LCN2, NGAL, HNL
    Database cross-references and differences (RAF-indexed):
    • Uniprot P80188 (Start-197)
      • engineered (98)
      • engineered (100)
      • engineered (106)
    Domains in SCOPe 2.08: d3by0a_
  • Chain 'B':
    Compound: Neutrophil gelatinase-associated lipocalin
    Species: HOMO SAPIENS
    Gene: LCN2, NGAL, HNL
    Database cross-references and differences (RAF-indexed):
    • Uniprot P80188 (Start-197)
      • engineered (98)
      • engineered (100)
      • engineered (106)
    Domains in SCOPe 2.08: d3by0b_
  • Chain 'C':
    Compound: Neutrophil gelatinase-associated lipocalin
    Species: HOMO SAPIENS
    Gene: LCN2, NGAL, HNL
    Database cross-references and differences (RAF-indexed):
    • Uniprot P80188
      • engineered (98)
      • engineered (100)
      • engineered (106)
    Domains in SCOPe 2.08: d3by0c_
  • Heterogens: FE, SO4, DBS, DBH, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3by0A (A:)
mplgllwlglallgalhaqaqdstsdlipapplskvplqqnfqdnqfqgkwyvvglagna
ilredkdpqkmyatiyelkedksynvtsvlfrkkkcdyaiatfvpgsqpgeftlgniksy
pgltsylvrvvstnynqhamvffkkvsqnreyfkitlygrtkeltselkenfirfskslg
lpenhivfpvpidqcidg

    Sequence, based on observed residues (ATOM records): (download) 
    >3by0A (A:)
sdlipapplskvplqqnfqdnqfqgkwyvvglagnailredkdpqkmyatiyelkedksy
nvtsvlfrkkkcdyaiatfvpgsqpgeftlgniksypgltsylvrvvstnynqhamvffk
kvsqnreyfkitlygrtkeltselkenfirfskslglpenhivfpvpidqcidg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3by0B (B:)
mplgllwlglallgalhaqaqdstsdlipapplskvplqqnfqdnqfqgkwyvvglagna
ilredkdpqkmyatiyelkedksynvtsvlfrkkkcdyaiatfvpgsqpgeftlgniksy
pgltsylvrvvstnynqhamvffkkvsqnreyfkitlygrtkeltselkenfirfskslg
lpenhivfpvpidqcidg

    Sequence, based on observed residues (ATOM records): (download) 
    >3by0B (B:)
sdlipapplskvplqqnfqdnqfqgkwyvvglagnailredkdpqkmyatiyelkesynv
tsvlfkkkcdyaiatfvpgsqpgeftlgniksypgltsylvrvvstnynqhamvffkkvs
qnreyfkitlygrtkeltselkenfirfskslglpenhivfpvpidqcidg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3by0C (C:)
mplgllwlglallgalhaqaqdstsdlipapplskvplqqnfqdnqfqgkwyvvglagna
ilredkdpqkmyatiyelkedksynvtsvlfrkkkcdyaiatfvpgsqpgeftlgniksy
pgltsylvrvvstnynqhamvffkkvsqnreyfkitlygrtkeltselkenfirfskslg
lpenhivfpvpidqcidg

    Sequence, based on observed residues (ATOM records): (download) 
    >3by0C (C:)
tsdlipapplskvplqqnfqdnqfqgkwyvvglagnailredkdpqkmyatiyelkedks
ynvtsvlfrkkkcdyaiatfvpgsqpgeftlgniksypgltsylvrvvstnynqhamvff
kkvsqnreyfkitlygrtkeltselkenfirfskslglpenhivfpvpidqcid