PDB entry 3bwr

View 3bwr on RCSB PDB site
Description: SV40 VP1 pentamer in complex with GM1 oligosaccharide
Class: viral protein
Keywords: SV40, GM1, viral receptor, viral attachment, ganglioside, VP1, polyomaviruses, Capsid protein, Late protein, Nucleus, Virion, VIRAL PROTEIN
Deposited on 2008-01-10, released 2008-03-04
The last revision prior to the SCOPe 2.05 freeze date was dated 2011-10-05, with a file datestamp of 2011-09-30.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: 0.192
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Capsid protein VP1
    Species: Simian virus 40 [TaxId:10633]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3bwra_
  • Chain 'B':
    Compound: Capsid protein VP1
    Species: Simian virus 40 [TaxId:10633]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3bwrb_
  • Chain 'C':
    Compound: Capsid protein VP1
    Species: Simian virus 40 [TaxId:10633]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3bwrc_
  • Chain 'D':
    Compound: Capsid protein VP1
    Species: Simian virus 40 [TaxId:10633]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3bwrd_
  • Chain 'E':
    Compound: Capsid protein VP1
    Species: Simian virus 40 [TaxId:10633]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3bwre_
  • Heterogens: EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3bwrA (A:)
gshmggievlgvktgvdsftevecflnpqmgnpdehqkglskslaaekqftddspdkeql
pcysvariplpninedltcgnilmweavtvktevigvtamlnlhsgtqkthengagkpiq
gsnfhffavggeplelqgvlanyrtkypaqtvtpknatvdsqqmntdhkavldkdnaypv
ecwvpdpsknentryfgtytggenvppvlhitntattvlldeqgvgplckadslyvsavd
icglftntsgtqqwkglpryfkitlrkrsvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >3bwrA (A:)
gievlgvktgvdsftevecflnpqmgnpdehqkglskslaaekqftddspdkeqlpcysv
ariplpninedltcgnilmweavtvktevigvtamlnlhsgtqkthengagkpiqgsnfh
ffavggeplelqgvlanyrtkypaqtvtpknatvdsqqmntdhkavldkdnaypvecwvp
dpsknentryfgtytggenvppvlhitntattvlldeqgvgplckadslyvsavdicglf
tntsgtqqwkglpryfkitlrkrsvkn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3bwrB (B:)
gshmggievlgvktgvdsftevecflnpqmgnpdehqkglskslaaekqftddspdkeql
pcysvariplpninedltcgnilmweavtvktevigvtamlnlhsgtqkthengagkpiq
gsnfhffavggeplelqgvlanyrtkypaqtvtpknatvdsqqmntdhkavldkdnaypv
ecwvpdpsknentryfgtytggenvppvlhitntattvlldeqgvgplckadslyvsavd
icglftntsgtqqwkglpryfkitlrkrsvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >3bwrB (B:)
sftevecflnpqmgnpdehqkglskslaaekqftddspdkeqlpcysvariplpninedl
tcgnilmweavtvktevigvtamlnlhsgtqkthengagkpiqgsnfhffavggeplelq
gvlanyrtkypaqtvtpknatvdsqqmntdhkavldkdnaypvecwvpdpsknentryfg
tytggenvppvlhitntattvlldeqgvgplckadslyvsavdicglftntsgtqqwkgl
pryfkitlrkrsvkn

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3bwrC (C:)
gshmggievlgvktgvdsftevecflnpqmgnpdehqkglskslaaekqftddspdkeql
pcysvariplpninedltcgnilmweavtvktevigvtamlnlhsgtqkthengagkpiq
gsnfhffavggeplelqgvlanyrtkypaqtvtpknatvdsqqmntdhkavldkdnaypv
ecwvpdpsknentryfgtytggenvppvlhitntattvlldeqgvgplckadslyvsavd
icglftntsgtqqwkglpryfkitlrkrsvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >3bwrC (C:)
gievlgvktgvdsftevecflnpqmgnpdehqkglskslaaekqftddspdkeqlpcysv
ariplpninedltcgnilmweavtvktevigvtamlnlhsgtqkthengagkpiqgsnfh
ffavggeplelqgvlanyrtkypaqtvtpknatvdsqqmntdhkavldkdnaypvecwvp
dpsknentryfgtytggenvppvlhitntattvlldeqgvgplckadslyvsavdicglf
tntsgtqqwkglpryfkitlrkrsvkn

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3bwrD (D:)
gshmggievlgvktgvdsftevecflnpqmgnpdehqkglskslaaekqftddspdkeql
pcysvariplpninedltcgnilmweavtvktevigvtamlnlhsgtqkthengagkpiq
gsnfhffavggeplelqgvlanyrtkypaqtvtpknatvdsqqmntdhkavldkdnaypv
ecwvpdpsknentryfgtytggenvppvlhitntattvlldeqgvgplckadslyvsavd
icglftntsgtqqwkglpryfkitlrkrsvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >3bwrD (D:)
gievlgvktgsftevecflnpqmgnpdehqkglskslaaekqftddspdkeqlpcysvar
iplpninedltcgnilmweavtvktevigvtamlnlhsgtqkthengagkpiqgsnfhff
avggeplelqgvlanyrtkypaqtvtpknatvdsqqmntdhkavldkdnaypvecwvpdp
sknentryfgtytggenvppvlhitntattvlldeqgvgplckadslyvsavdicglftn
tsgtqqwkglpryfkitlrkrsvkn

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3bwrE (E:)
gshmggievlgvktgvdsftevecflnpqmgnpdehqkglskslaaekqftddspdkeql
pcysvariplpninedltcgnilmweavtvktevigvtamlnlhsgtqkthengagkpiq
gsnfhffavggeplelqgvlanyrtkypaqtvtpknatvdsqqmntdhkavldkdnaypv
ecwvpdpsknentryfgtytggenvppvlhitntattvlldeqgvgplckadslyvsavd
icglftntsgtqqwkglpryfkitlrkrsvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >3bwrE (E:)
ievlgvktdsftevecflnpqmgnpdehqkglskslaaekqftddspdkeqlpcysvari
plpninedltcgnilmweavtvktevigvtamlnlhsgtqkthengagkpiqgsnfhffa
vggeplelqgvlanyrtkypaqtvtpknatvdsqqmntdhkavldkdnaypvecwvpdps
knentryfgtytggenvppvlhitntattvlldeqgvgplckadslyvsavdicglftnt
sgtqqwkglpryfkitlrkrsvkn