PDB entry 3bwg

View 3bwg on RCSB PDB site
Description: The crystal structure of possible transcriptional regulator YydK from Bacillus subtilis subsp. subtilis str. 168
Class: transcription regulator
Keywords: APC85486, YydK, transcriptional regulator, structural genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, DNA-binding, Transcription regulation, TRANSCRIPTION REGULATOR
Deposited on 2008-01-09, released 2008-01-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.09 Å
R-factor: 0.189
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Uncharacterized HTH-type transcriptional regulator yydK
    Species: BACILLUS SUBTILIS [TaxId:224308]
    Gene: yydK, BSU40130
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bwga1, d3bwga2
  • Chain 'B':
    Compound: Uncharacterized HTH-type transcriptional regulator yydK
    Species: BACILLUS SUBTILIS [TaxId:224308]
    Gene: yydK, BSU40130
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bwgb1, d3bwgb2
  • Chain 'C':
    Compound: Uncharacterized HTH-type transcriptional regulator yydK
    Species: BACILLUS SUBTILIS [TaxId:224308]
    Gene: yydK, BSU40130
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bwgc1, d3bwgc2
  • Heterogens: EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3bwgA (A:)
    snamlkyqqiateietyieehqlqqgdklpvletlmaqfevskstitkslelleqkgaif
    qvrgsgifvrkhkrkgyisllsnqgfkkdledfnvtskvieldvrkptpeaaenlnigmd
    ediyyvkrvryingqtlcyeesyytksivtylnneivshsifhyireglglkigfsdlfl
    hvgqlneeeaeylgleaglpklyiesifhltngqpfdyskisynyeqsqfvvqansfll
    

    Sequence, based on observed residues (ATOM records): (download)
    >3bwgA (A:)
    qqiateietyieehqlqqgdklpvletlmaqfevskstitkslelleqkgaifqvrgsgi
    fvrkhkrkgyisllsnqgdfnvtskvieldvrkptpeaaenlnigmdediyyvkrvryin
    gqtlcyeesyytksivtylnneivshsifhyireglglkigfsdlflhvgqlneeeaeyl
    gleaglpklyiesifhltngqpfdyskisynyeqsqfvvqans
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3bwgB (B:)
    snamlkyqqiateietyieehqlqqgdklpvletlmaqfevskstitkslelleqkgaif
    qvrgsgifvrkhkrkgyisllsnqgfkkdledfnvtskvieldvrkptpeaaenlnigmd
    ediyyvkrvryingqtlcyeesyytksivtylnneivshsifhyireglglkigfsdlfl
    hvgqlneeeaeylgleaglpklyiesifhltngqpfdyskisynyeqsqfvvqansfll
    

    Sequence, based on observed residues (ATOM records): (download)
    >3bwgB (B:)
    mlkyqqiateietyieehqlqqgdklpvletlmaqfevskstitkslelleqkgaifqvr
    gsgifvrkhkrkgyisllsnqdledfnvtskvieldvrkptpeaaenlnigmdediyyvk
    rvryingqtlcyeesyytksivtylnneivshsifhyireglglkigfsdlflhvgqlne
    eeaeylgleaglpklyiesifhltngqpfdyskisynyeqsqfvvqan
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3bwgC (C:)
    snamlkyqqiateietyieehqlqqgdklpvletlmaqfevskstitkslelleqkgaif
    qvrgsgifvrkhkrkgyisllsnqgfkkdledfnvtskvieldvrkptpeaaenlnigmd
    ediyyvkrvryingqtlcyeesyytksivtylnneivshsifhyireglglkigfsdlfl
    hvgqlneeeaeylgleaglpklyiesifhltngqpfdyskisynyeqsqfvvqansfll
    

    Sequence, based on observed residues (ATOM records): (download)
    >3bwgC (C:)
    kyqqiateietyieehqlqqgdklpvletlmaqfevskstitkslelleqkgaifqvrgs
    gifvrkhkrkgyisllsledfnvtskvieldvrkptpeaaenlnigmdediyyvkrvryi
    ngqtlcyeesyytksivtylnneivshsifhyireglglkigfsdlflhvgqlneeeaey
    lgleaglpklyiesifhltngqpfdyskisynyeqsqfvvqans