PDB entry 3bwg
View 3bwg on RCSB PDB site
Description: The crystal structure of possible transcriptional regulator YydK from Bacillus subtilis subsp. subtilis str. 168
Class: transcription regulator
Keywords: APC85486, YydK, transcriptional regulator, structural genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, DNA-binding, Transcription regulation, TRANSCRIPTION REGULATOR
Deposited on
2008-01-09, released
2008-01-22
The last revision prior to the SCOPe 2.08 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.09 Å
R-factor: 0.189
AEROSPACI score: 0.41
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Uncharacterized HTH-type transcriptional regulator yydK
Species: BACILLUS SUBTILIS [TaxId:224308]
Gene: yydK, BSU40130
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3bwga1, d3bwga2 - Chain 'B':
Compound: Uncharacterized HTH-type transcriptional regulator yydK
Species: BACILLUS SUBTILIS [TaxId:224308]
Gene: yydK, BSU40130
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3bwgb1, d3bwgb2 - Chain 'C':
Compound: Uncharacterized HTH-type transcriptional regulator yydK
Species: BACILLUS SUBTILIS [TaxId:224308]
Gene: yydK, BSU40130
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3bwgc1, d3bwgc2 - Heterogens: EDO, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3bwgA (A:)
snamlkyqqiateietyieehqlqqgdklpvletlmaqfevskstitkslelleqkgaif
qvrgsgifvrkhkrkgyisllsnqgfkkdledfnvtskvieldvrkptpeaaenlnigmd
ediyyvkrvryingqtlcyeesyytksivtylnneivshsifhyireglglkigfsdlfl
hvgqlneeeaeylgleaglpklyiesifhltngqpfdyskisynyeqsqfvvqansfll
Sequence, based on observed residues (ATOM records): (download)
>3bwgA (A:)
qqiateietyieehqlqqgdklpvletlmaqfevskstitkslelleqkgaifqvrgsgi
fvrkhkrkgyisllsnqgdfnvtskvieldvrkptpeaaenlnigmdediyyvkrvryin
gqtlcyeesyytksivtylnneivshsifhyireglglkigfsdlflhvgqlneeeaeyl
gleaglpklyiesifhltngqpfdyskisynyeqsqfvvqans
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3bwgB (B:)
snamlkyqqiateietyieehqlqqgdklpvletlmaqfevskstitkslelleqkgaif
qvrgsgifvrkhkrkgyisllsnqgfkkdledfnvtskvieldvrkptpeaaenlnigmd
ediyyvkrvryingqtlcyeesyytksivtylnneivshsifhyireglglkigfsdlfl
hvgqlneeeaeylgleaglpklyiesifhltngqpfdyskisynyeqsqfvvqansfll
Sequence, based on observed residues (ATOM records): (download)
>3bwgB (B:)
mlkyqqiateietyieehqlqqgdklpvletlmaqfevskstitkslelleqkgaifqvr
gsgifvrkhkrkgyisllsnqdledfnvtskvieldvrkptpeaaenlnigmdediyyvk
rvryingqtlcyeesyytksivtylnneivshsifhyireglglkigfsdlflhvgqlne
eeaeylgleaglpklyiesifhltngqpfdyskisynyeqsqfvvqan
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3bwgC (C:)
snamlkyqqiateietyieehqlqqgdklpvletlmaqfevskstitkslelleqkgaif
qvrgsgifvrkhkrkgyisllsnqgfkkdledfnvtskvieldvrkptpeaaenlnigmd
ediyyvkrvryingqtlcyeesyytksivtylnneivshsifhyireglglkigfsdlfl
hvgqlneeeaeylgleaglpklyiesifhltngqpfdyskisynyeqsqfvvqansfll
Sequence, based on observed residues (ATOM records): (download)
>3bwgC (C:)
kyqqiateietyieehqlqqgdklpvletlmaqfevskstitkslelleqkgaifqvrgs
gifvrkhkrkgyisllsledfnvtskvieldvrkptpeaaenlnigmdediyyvkrvryi
ngqtlcyeesyytksivtylnneivshsifhyireglglkigfsdlflhvgqlneeeaey
lgleaglpklyiesifhltngqpfdyskisynyeqsqfvvqans