PDB entry 3bvn
View 3bvn on RCSB PDB site
Description: High resolution crystal structure of HLA-B*1402 in complex with the latent membrane protein 2 peptide (LMP2) of Epstein-Barr virus
Class: immune system
Keywords: Major Histocompatibility Complex, MHC, Human Leukocyte Antigen, HLA, HLA-B14, HLA-B*14, HLA-B1402, HLA-B*1402, pLMP2, Ankylosing Spondylitis, Disease mutation, Glycation, Glycoprotein, Immune response, Immunoglobulin domain, MHC I, Pyrrolidone carboxylic acid, Secreted, Alternative splicing, Cytoplasm, Host-virus interaction, Membrane, Phosphoprotein, Transmembrane, Ubl conjugation, IMMUNE SYSTEM
Deposited on
2008-01-07, released
2009-02-03
The last revision prior to the SCOPe 2.05 freeze date was dated
2009-11-10, with a file datestamp of
2009-11-06.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: 0.24
AEROSPACI score: 0.27
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: HLA class I histocompatibility antigen, B*1402 alpha chain
Species: HOMO SAPIENS
Gene: HLA-B
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: Beta-2-microglobulin
Species: HOMO SAPIENS
Gene: B2M
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3bvnb_ - Chain 'C':
Compound: Latent membrane protein 2 peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: HLA class I histocompatibility antigen, B*1402 alpha chain
Species: HOMO SAPIENS
Gene: HLA-B
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: Beta-2-microglobulin
Species: HOMO SAPIENS
Gene: B2M
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3bvne_ - Chain 'F':
Compound: Latent membrane protein 2 peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3bvnB (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
Sequence, based on observed residues (ATOM records): (download)
>3bvnB (B:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.
- Chain 'E':
Sequence, based on SEQRES records: (download)
>3bvnE (E:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
Sequence, based on observed residues (ATOM records): (download)
>3bvnE (E:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'F':
No sequence available.