PDB entry 3bvf

View 3bvf on RCSB PDB site
Description: Structural basis for the iron uptake mechanism of Helicobacter pylori ferritin
Class: Oxidoreductase
Keywords: iron storage, Metal-binding, Oxidoreductase
Deposited on 2008-01-07, released 2009-01-13
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: 0.169
AEROSPACI score: 0.67 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ferritin
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9ZLI1 (14-End)
      • expression tag (8-13)
    Domains in SCOPe 2.07: d3bvfa1, d3bvfa2
  • Chain 'B':
    Compound: Ferritin
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9ZLI1 (14-End)
      • expression tag (8-13)
    Domains in SCOPe 2.07: d3bvfb1, d3bvfb2
  • Chain 'C':
    Compound: Ferritin
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9ZLI1 (14-End)
      • expression tag (8-13)
    Domains in SCOPe 2.07: d3bvfc1, d3bvfc2
  • Chain 'D':
    Compound: Ferritin
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9ZLI1 (14-End)
      • expression tag (8-13)
    Domains in SCOPe 2.07: d3bvfd1, d3bvfd2
  • Chain 'E':
    Compound: Ferritin
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9ZLI1 (14-End)
      • expression tag (8-13)
    Domains in SCOPe 2.07: d3bvfe1, d3bvfe2
  • Chain 'F':
    Compound: Ferritin
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9ZLI1 (14-End)
      • expression tag (8-13)
    Domains in SCOPe 2.07: d3bvff1, d3bvff2
  • Heterogens: FE, IPA, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3bvfA (A:)
mgsshhhhhhsqdpmlskdiikllneqvnkemnssnlymsmsswcythsldgaglflfdh
aaeeyehakkliiflnennvpvqltsisapehkfegltqifqkayeheqhisesinnivd
haikskdhatfnflqwyvaeqheeevlfkdildkielignenhglyladqyvkgiaksrk
s

    Sequence, based on observed residues (ATOM records): (download) 
    >3bvfA (A:)
hhsqdpmlskdiikllneqvnkemnssnlymsmsswcythsldgaglflfdhaaeeyeha
kkliiflnennvpvqltsisapehkfegltqifqkayeheqhisesinnivdhaikskdh
atfnflqwyvaeqheeevlfkdildkielignenhglyladqyvkgiaksrk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3bvfB (B:)
mgsshhhhhhsqdpmlskdiikllneqvnkemnssnlymsmsswcythsldgaglflfdh
aaeeyehakkliiflnennvpvqltsisapehkfegltqifqkayeheqhisesinnivd
haikskdhatfnflqwyvaeqheeevlfkdildkielignenhglyladqyvkgiaksrk
s

    Sequence, based on observed residues (ATOM records): (download) 
    >3bvfB (B:)
hhsqdpmlskdiikllneqvnkemnssnlymsmsswcythsldgaglflfdhaaeeyeha
kkliiflnennvpvqltsisapehkfegltqifqkayeheqhisesinnivdhaikskdh
atfnflqwyvaeqheeevlfkdildkielignenhglyladqyvkgiaksrk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3bvfC (C:)
mgsshhhhhhsqdpmlskdiikllneqvnkemnssnlymsmsswcythsldgaglflfdh
aaeeyehakkliiflnennvpvqltsisapehkfegltqifqkayeheqhisesinnivd
haikskdhatfnflqwyvaeqheeevlfkdildkielignenhglyladqyvkgiaksrk
s

    Sequence, based on observed residues (ATOM records): (download) 
    >3bvfC (C:)
hhsqdpmlskdiikllneqvnkemnssnlymsmsswcythsldgaglflfdhaaeeyeha
kkliiflnennvpvqltsisapehkfegltqifqkayeheqhisesinnivdhaikskdh
atfnflqwyvaeqheeevlfkdildkielignenhglyladqyvkgiaksrk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3bvfD (D:)
mgsshhhhhhsqdpmlskdiikllneqvnkemnssnlymsmsswcythsldgaglflfdh
aaeeyehakkliiflnennvpvqltsisapehkfegltqifqkayeheqhisesinnivd
haikskdhatfnflqwyvaeqheeevlfkdildkielignenhglyladqyvkgiaksrk
s

    Sequence, based on observed residues (ATOM records): (download) 
    >3bvfD (D:)
hhsqdpmlskdiikllneqvnkemnssnlymsmsswcythsldgaglflfdhaaeeyeha
kkliiflnennvpvqltsisapehkfegltqifqkayeheqhisesinnivdhaikskdh
atfnflqwyvaeqheeevlfkdildkielignenhglyladqyvkgiaksrk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3bvfE (E:)
mgsshhhhhhsqdpmlskdiikllneqvnkemnssnlymsmsswcythsldgaglflfdh
aaeeyehakkliiflnennvpvqltsisapehkfegltqifqkayeheqhisesinnivd
haikskdhatfnflqwyvaeqheeevlfkdildkielignenhglyladqyvkgiaksrk
s

    Sequence, based on observed residues (ATOM records): (download) 
    >3bvfE (E:)
hhsqdpmlskdiikllneqvnkemnssnlymsmsswcythsldgaglflfdhaaeeyeha
kkliiflnennvpvqltsisapehkfegltqifqkayeheqhisesinnivdhaikskdh
atfnflqwyvaeqheeevlfkdildkielignenhglyladqyvkgiaksrk

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3bvfF (F:)
mgsshhhhhhsqdpmlskdiikllneqvnkemnssnlymsmsswcythsldgaglflfdh
aaeeyehakkliiflnennvpvqltsisapehkfegltqifqkayeheqhisesinnivd
haikskdhatfnflqwyvaeqheeevlfkdildkielignenhglyladqyvkgiaksrk
s

    Sequence, based on observed residues (ATOM records): (download) 
    >3bvfF (F:)
hhsqdpmlskdiikllneqvnkemnssnlymsmsswcythsldgaglflfdhaaeeyeha
kkliiflnennvpvqltsisapehkfegltqifqkayeheqhisesinnivdhaikskdh
atfnflqwyvaeqheeevlfkdildkielignenhglyladqyvkgiaksrk