PDB entry 3bql

View 3bql on RCSB PDB site
Description: Structure of a chondroitin sulphate binding DBL3X domain from a var2csa encoded PfEMP1 protein
Deposited on 2007-12-20, released 2008-06-24
The last revision was dated 2014-03-19, with a file datestamp of 2014-03-14.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.225
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Erythrocyte membrane protein 1
    Species: Plasmodium falciparum [TaxId:5833]
    Gene: var
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SO4, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3bqlA (A:)
scdlnatnyirgcqsktydgkifpgkggekqwickdtiihgdtngacipprtqnlcvgel
wdksyggrsnikndtkellkekiknaihketellyeyhdtgtaiiskndkkgqkgkndpn
glpkgfchavqrsfidyknmilgtsvniyehigklqedikkiiekgtpqqkdkiggvgss
tenvnawwkgieremwdavrcaitkinkknnnsifngdecgvspptgndedqsvswfkew
geqfcierlryeqnireactingknekkcinsksgqgdkiqgackrkcekykkyisekkq
ewdkqktkyenkyvgksasdllkenypecisanfdfifndnieyktyypygdyssicsce

    Sequence, based on observed residues (ATOM records):
    >3bqlA (A:)
scdlnatnyirgcqsktydgkifpgkggekqwickdtiihgdtngacipprtqnlcvgel
wdksyggrsnikndtkellkekiknaihketellyeyhdtgtaiiskndkkgqkgkndpn
glpkgfchavqrsfidyknmilgtsvniyehigklqedikkiiekgtpqqstenvnawwk
gieremwdavrcaitkinkknnnsifngdecgvspptdqsvswfkewgeqfcierlryeq
nireactekkcinsgdkiqgackrkcekykkyisekkqewdkqktkyenkyvgksasdll
kenypecisanfdfifndnieyktyypygdyssicsce