PDB entry 3bp9

View 3bp9 on RCSB PDB site
Description: Structure of B-tropic MLV capsid N-terminal domain
Class: viral protein
Keywords: Capsid, Hexamer, MLV, Metal-binding, Zinc-finger, VIRAL PROTEIN
Deposited on 2007-12-18, released 2008-02-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.226
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9a_
  • Chain 'B':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9b_
  • Chain 'C':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9c_
  • Chain 'D':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9d_
  • Chain 'E':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9e_
  • Chain 'F':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9f_
  • Chain 'G':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9g_
  • Chain 'H':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9h_
  • Chain 'I':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9i_
  • Chain 'J':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9j_
  • Chain 'K':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9k_
  • Chain 'L':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9l_
  • Chain 'M':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9m_
  • Chain 'N':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9n_
  • Chain 'O':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9o_
  • Chain 'P':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9p_
  • Chain 'Q':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9q_
  • Chain 'R':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9r_
  • Chain 'S':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9s_
  • Chain 'T':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9t_
  • Chain 'U':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9u_
  • Chain 'V':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9v_
  • Chain 'X':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9x_
  • Chain 'Y':
    Compound: gag protein
    Species: Murine leukemia virus [TaxId:11786]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bp9y_
  • Heterogens: IPA, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3bp9A (A:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9A (A:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3bp9B (B:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9B (B:)
plrllqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllgtlltg
eekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrqlllag
lqnagr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3bp9C (C:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9C (C:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagr

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3bp9D (D:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9D (D:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagr

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3bp9E (E:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9E (E:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrs

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3bp9F (F:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9F (F:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagr

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3bp9G (G:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9G (G:)
plrlggnglqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllgt
lltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrql
llaglqnagr

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3bp9H (H:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9H (H:)
plrlgqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllgtll
tgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrqlll
aglqnagr

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >3bp9I (I:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9I (I:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagr

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >3bp9J (J:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9J (J:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrs

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >3bp9K (K:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9K (K:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagr

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >3bp9L (L:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9L (L:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagr

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >3bp9M (M:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9M (M:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrs

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >3bp9N (N:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9N (N:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrrptqlpnevdaafplerpdwdytttegrnhlvlyrqllla
glqnagrs

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >3bp9O (O:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9O (O:)
plrllqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllgtlltg
eekqrvllearkavqlpnevdaafplerpdwdytttegrnhlvlyrqlllaglqnagr

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >3bp9P (P:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9P (P:)
plrlglqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllgtllt
geekqrvllearkavrtqlpnevdaafplerpdwdytttegrnhlvlyrqlllaglqnag
r

  • Chain 'Q':
    Sequence, based on SEQRES records: (download) 
    >3bp9Q (Q:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9Q (Q:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrtqlpnevdaafplerpdwdytttegrnhlvlyrqlllagl
qnagr

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >3bp9R (R:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9R (R:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavqlpnevdaafplerpdwdytttegrnhlvlyrqlllaglqn
agr

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >3bp9S (S:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9S (S:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrs

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >3bp9T (T:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9T (T:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrs

  • Chain 'U':
    Sequence, based on SEQRES records: (download) 
    >3bp9U (U:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9U (U:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrevdaafplerpdwdytttegrnhlvlyrqlllaglqnagr

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >3bp9V (V:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9V (V:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavevdaafplerpdwdytttegrnhlvlyrqlllaglqnagr

  • Chain 'X':
    Sequence, based on SEQRES records: (download) 
    >3bp9X (X:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9X (X:)
plrlgngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllgt
lltgeekqrvllearkavrqlpnevdaafplerpdwdytttegrnhlvlyrqlllaglqn
agrs

  • Chain 'Y':
    Sequence, based on SEQRES records: (download) 
    >3bp9Y (Y:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavrgndgrptqlpnevdaafplerpdwdytttegrnhlvlyrq
lllaglqnagrslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bp9Y (Y:)
plrlggngqlqywpfsssdlynwknnnpsfsedpgkltaliesvltthqptwddcqqllg
tlltgeekqrvllearkavtqlpnevdaafplerpdwdytttegrnhlvlyrqlllaglq
nagr