PDB entry 3bk9

View 3bk9 on RCSB PDB site
Description: H55A mutant of tryptophan 2,3-dioxygenase from Xanthomonas campestris
Class: oxidoreductase
Keywords: tryptophan dioxygenase, H55A mutant, heme, OXIDOREDUCTASE
Deposited on 2007-12-06, released 2008-09-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.205
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Tryptophan 2,3-dioxygenase
    Species: Xanthomonas campestris pv. campestris [TaxId:340]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8PDA8
      • engineered (54)
    Domains in SCOPe 2.08: d3bk9a_
  • Chain 'B':
    Compound: Tryptophan 2,3-dioxygenase
    Species: Xanthomonas campestris pv. campestris [TaxId:340]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8PDA8
      • engineered (54)
    Domains in SCOPe 2.08: d3bk9b_
  • Chain 'C':
    Compound: Tryptophan 2,3-dioxygenase
    Species: Xanthomonas campestris pv. campestris [TaxId:340]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8PDA8
      • engineered (54)
    Domains in SCOPe 2.08: d3bk9c_
  • Chain 'D':
    Compound: Tryptophan 2,3-dioxygenase
    Species: Xanthomonas campestris pv. campestris [TaxId:340]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8PDA8
      • engineered (54)
    Domains in SCOPe 2.08: d3bk9d_
  • Chain 'E':
    Compound: Tryptophan 2,3-dioxygenase
    Species: Xanthomonas campestris pv. campestris [TaxId:340]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8PDA8
      • engineered (54)
    Domains in SCOPe 2.08: d3bk9e_
  • Chain 'F':
    Compound: Tryptophan 2,3-dioxygenase
    Species: Xanthomonas campestris pv. campestris [TaxId:340]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8PDA8
      • engineered (54)
    Domains in SCOPe 2.08: d3bk9f_
  • Chain 'G':
    Compound: Tryptophan 2,3-dioxygenase
    Species: Xanthomonas campestris pv. campestris [TaxId:340]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8PDA8
      • engineered (54)
    Domains in SCOPe 2.08: d3bk9g_
  • Chain 'H':
    Compound: Tryptophan 2,3-dioxygenase
    Species: Xanthomonas campestris pv. campestris [TaxId:340]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8PDA8
      • engineered (54)
    Domains in SCOPe 2.08: d3bk9h_
  • Heterogens: TRP, HEM, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3bk9A (A:)
    mpvdknlrdlepgihtdlegrltyggylrldqllsaqqplsepahhdemlfiiqaqtsel
    wlkllahelraaivhlqrdevwqcrkvlarskqvlrqlteqwsvletltpseymgfrdvl
    gpssgfqslqyryiefllgnknpqmlqvfaydpagqarlrevleapslyeeflrylarfg
    haipqqyqardwtaahvaddtlrpvferiyentdrywreyslcedlvdvetqfqlwrfrh
    mrtvmrvigfkrgtggssgvgflqqalaltffpelfdvrtsvgvdnrppqgsadagkrle
    hhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3bk9A (A:)
    lrdlepgihtdlegrltyggylrldqllsaqqplsepahhdemlfiiqaqtselwlklla
    helraaivhlqrdevwqcrkvlarskqvlrqlteqwsvletltpseymgfrdvlgpssgf
    qslqyryiefllgnknpqmlqvfaydpagqarlrevleapslyeeflrylarfghaipqq
    yqardwtaahvaddtlrpvferiyentdrywreyslcedlvdvetqfqlwrfrhmrtvmr
    vigfkrgtggssgvgflqqalaltffpelfdvrtsvg
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3bk9B (B:)
    mpvdknlrdlepgihtdlegrltyggylrldqllsaqqplsepahhdemlfiiqaqtsel
    wlkllahelraaivhlqrdevwqcrkvlarskqvlrqlteqwsvletltpseymgfrdvl
    gpssgfqslqyryiefllgnknpqmlqvfaydpagqarlrevleapslyeeflrylarfg
    haipqqyqardwtaahvaddtlrpvferiyentdrywreyslcedlvdvetqfqlwrfrh
    mrtvmrvigfkrgtggssgvgflqqalaltffpelfdvrtsvgvdnrppqgsadagkrle
    hhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3bk9B (B:)
    lrdlepgihtdlegrltyggylrldqllsaqqplsepahhdemlfiiqaqtselwlklla
    helraaivhlqrdevwqcrkvlarskqvlrqlteqwsvletltpseymgfrdvlgpssgf
    qslqyryiefllgnknpqmlqvfaydpagqarlrevleapslyeeflrylarfghaipqq
    yqardwtaahvaddtlrpvferiyentdrywreyslcedlvdvetqfqlwrfrhmrtvmr
    vigfkrgtggssgvgflqqalaltffpelfdvrtsvgvdn
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3bk9C (C:)
    mpvdknlrdlepgihtdlegrltyggylrldqllsaqqplsepahhdemlfiiqaqtsel
    wlkllahelraaivhlqrdevwqcrkvlarskqvlrqlteqwsvletltpseymgfrdvl
    gpssgfqslqyryiefllgnknpqmlqvfaydpagqarlrevleapslyeeflrylarfg
    haipqqyqardwtaahvaddtlrpvferiyentdrywreyslcedlvdvetqfqlwrfrh
    mrtvmrvigfkrgtggssgvgflqqalaltffpelfdvrtsvgvdnrppqgsadagkrle
    hhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3bk9C (C:)
    lrdlepgihtdlegrltyggylrldqllsaqqplsepahhdemlfiiqaqtselwlklla
    helraaivhlqrdevwqcrkvlarskqvlrqlteqwsvletltpseymgfrdvlgpssgf
    qslqyryiefllgnknpqmlqvfaydpagqarlrevleapslyeeflrylarfghaipqq
    dwtaahvaddtlrpvferiyentdrywreyslcedlvdvetqfqlwrfrhmrtvmrvigf
    krgtggssgvgflqqalaltffpelfdvrtsv
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3bk9D (D:)
    mpvdknlrdlepgihtdlegrltyggylrldqllsaqqplsepahhdemlfiiqaqtsel
    wlkllahelraaivhlqrdevwqcrkvlarskqvlrqlteqwsvletltpseymgfrdvl
    gpssgfqslqyryiefllgnknpqmlqvfaydpagqarlrevleapslyeeflrylarfg
    haipqqyqardwtaahvaddtlrpvferiyentdrywreyslcedlvdvetqfqlwrfrh
    mrtvmrvigfkrgtggssgvgflqqalaltffpelfdvrtsvgvdnrppqgsadagkrle
    hhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3bk9D (D:)
    ltyggylrldqllsaqqplsepahhdemlfiiqaqtselwlkllahelraaivhlqrdev
    wqcrkvlarskqvlrqlteqwsvletltpseymgfrdvlgpssgfqslqyryiefllgnk
    npqmlqvfaydpagqarlrevleapslyeeflrylarfghaipqqyqardwtaahvaddt
    lrpvferiyentdrywreyslcedlvdvetqfqlwrfrhmrtvmrvigfkrgtggssgvg
    flqqalaltffpelfdvrtsvg
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3bk9E (E:)
    mpvdknlrdlepgihtdlegrltyggylrldqllsaqqplsepahhdemlfiiqaqtsel
    wlkllahelraaivhlqrdevwqcrkvlarskqvlrqlteqwsvletltpseymgfrdvl
    gpssgfqslqyryiefllgnknpqmlqvfaydpagqarlrevleapslyeeflrylarfg
    haipqqyqardwtaahvaddtlrpvferiyentdrywreyslcedlvdvetqfqlwrfrh
    mrtvmrvigfkrgtggssgvgflqqalaltffpelfdvrtsvgvdnrppqgsadagkrle
    hhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3bk9E (E:)
    tyggylrldqllsaqqplsepahhdemlfiiqaqtselwlkllahelraaivhlqrdevw
    qcrkvlarskqvlrqlteqwsvletltpseymgfrdvlgpssgfqslqyryiefllgnkn
    pqmlqvfaydpagqarlrevleapslyeeflrylarfghaipqqyqardwtaahvaddtl
    rpvferiyentdrywreyslcedlvdvetqfqlwrfrhmrtvmrvigfkrgtggssgvgf
    lqqalaltffpelfdvrtsv
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3bk9F (F:)
    mpvdknlrdlepgihtdlegrltyggylrldqllsaqqplsepahhdemlfiiqaqtsel
    wlkllahelraaivhlqrdevwqcrkvlarskqvlrqlteqwsvletltpseymgfrdvl
    gpssgfqslqyryiefllgnknpqmlqvfaydpagqarlrevleapslyeeflrylarfg
    haipqqyqardwtaahvaddtlrpvferiyentdrywreyslcedlvdvetqfqlwrfrh
    mrtvmrvigfkrgtggssgvgflqqalaltffpelfdvrtsvgvdnrppqgsadagkrle
    hhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3bk9F (F:)
    tyggylrldqllsaqqplsepahhdemlfiiqaqtselwlkllahelraaivhlqrdevw
    qcrkvlarskqvlrqlteqwsvletltpseymgfrdvlgpssgfqslqyryiefllgnkn
    pqmlqvfaydpagqarlrevleapslyeeflrylarfghaipqqyddtlrpvferiyent
    drywreyslcedlvdvetqfqlwrfrhmrtvmrvigfkrgtggssgvgflqqalaltffp
    elfdvrtsvg
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >3bk9G (G:)
    mpvdknlrdlepgihtdlegrltyggylrldqllsaqqplsepahhdemlfiiqaqtsel
    wlkllahelraaivhlqrdevwqcrkvlarskqvlrqlteqwsvletltpseymgfrdvl
    gpssgfqslqyryiefllgnknpqmlqvfaydpagqarlrevleapslyeeflrylarfg
    haipqqyqardwtaahvaddtlrpvferiyentdrywreyslcedlvdvetqfqlwrfrh
    mrtvmrvigfkrgtggssgvgflqqalaltffpelfdvrtsvgvdnrppqgsadagkrle
    hhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3bk9G (G:)
    rltyggylrldqllsaqqplsepahhdemlfiiqaqtselwlkllahelraaivhlqrde
    vwqcrkvlarskqvlrqlteqwsvletltpseymgfrdvlgpssgfqslqyryiefllgn
    knpqmlqvfaydpagqarlrevleapslyeeflrylarfghaipqqyqardwtaahvadd
    tlrpvferiyentdrywreyslcedlvdvetqfqlwrfrhmrtvmrvigfkrgtggssgv
    gflqqalaltffpelfdvrtsv
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >3bk9H (H:)
    mpvdknlrdlepgihtdlegrltyggylrldqllsaqqplsepahhdemlfiiqaqtsel
    wlkllahelraaivhlqrdevwqcrkvlarskqvlrqlteqwsvletltpseymgfrdvl
    gpssgfqslqyryiefllgnknpqmlqvfaydpagqarlrevleapslyeeflrylarfg
    haipqqyqardwtaahvaddtlrpvferiyentdrywreyslcedlvdvetqfqlwrfrh
    mrtvmrvigfkrgtggssgvgflqqalaltffpelfdvrtsvgvdnrppqgsadagkrle
    hhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3bk9H (H:)
    ltyggylrldqllsaqqplsepahhdemlfiiqaqtselwlkllahelraaivhlqrdev
    wqcrkvlarskqvlrqlteqwsvletltpseymgfrdvlgpssgfqslqyryiefllgnk
    npqmlqvfaydpagqarlrevleapslyeeflrylarfghaipqqwtaahvaddtlrpvf
    eriyentdrywreyslcedlvdvetqfqlwrfrhmrtvmrvigfkrgtggssgvgflqqa
    laltffpelfdvrtsvg