PDB entry 3bjc

View 3bjc on RCSB PDB site
Description: Crystal structure of the PDE5A catalytic domain in complex with a novel inhibitor
Class: hydrolase
Keywords: PDE5, erectile dysfunction, crystal structure, inhibitor design, Allosteric enzyme, Alternative splicing, cGMP, cGMP-binding, Hydrolase, Magnesium, Metal-binding, Nucleotide-binding, Phosphoprotein, Polymorphism, Zinc
Deposited on 2007-12-03, released 2008-04-29
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.197
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: cGMP-specific 3',5'-cyclic phosphodiesterase
    Species: Homo sapiens [TaxId:9606]
    Gene: PDE5A, PDE5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3bjca_
  • Heterogens: ZN, MG, WAN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3bjcA (A:)
    gshmeragpsfgqqrqqqqpqqqkqqqrdqdsveawlddhwdftfsyfvrkatremvnaw
    faervhtipvckegirghtescscplqqspradnsvpgtptrkisasefdrplrpivvkd
    segtvsflsdsekkeqmpltpprfdhdegdqcsrllelvkdisshldvtalchkiflhih
    glisadryslflvcedssndkflisrlfdvaegstleevsnncirlewnkgivghvaalg
    eplnikdayedprfnaevdqitgyktqsilcmpiknhreevvgvaqainkksgnggtfte
    kdekdfaaylafcgivlhnaqlyetsllenkrnqvlldlaslifeeqqslevilkkiaat
    iisfmqvqkctifivdedcsdsfssvfhmeceelekssdtltrehdankinymyaqyvkn
    tmeplnipdvskdkrfpwttentgnvnqqcirsllctpikngkknkvigvcqlvnkmeen
    tgkvkpfnrndeqfleafvifcglgiqntqmyeaveramakqmvtlevlsyhasaaeeet
    relqslaaavvpsaqtlkitdfsfsdfelsdletalctirmftdlnlvqnfqmkhevlcr
    wilsvkknyrknvayhnwrhafntaqcmfaalkagkiqnkltdleilalliaalshdldh
    rgvnnsyiqrsehplaqlychsimehhhfdqclmilnspgnqilsglsieeykttlkiik
    qailatdlalyikrrgeffelirknqfnledphqkelflamlmtacdlsaitkpwpiqqr
    iaelvateffdqgdrerkelnieptdlmnrekknkipsmqvgfidaiclqlyealthvse
    dcfplldgcrknrqkwqalaeqqekmlingesgqakrn
    

    Sequence, based on observed residues (ATOM records): (download)
    >3bjcA (A:)
    eetrelqslaaavvpsaqtlkitdfsfsdfelsdletalctirmftdlnlvqnfqmkhev
    lcrwilsvkknyrknvayhnwrhafntaqcmfaalkagkiqnkltdleilalliaalshd
    ldhrgvnnsyiqrsehplaqlychsimehhhfdqclmilnspgnqilsglsieeykttlk
    iikqailatdlalyikrrgeffelirknqfnledphqkelflamlmtacdlsaitkpwpi
    qqriaelvateffdqgdrekknkipsmqvgfidaiclqlyealthvsedcfplldgcrkn
    rqkwqalaeqq