PDB entry 3bix

View 3bix on RCSB PDB site
Description: Crystal structure of the extracellular esterase domain of Neuroligin-1
Class: cell adhesion
Keywords: esterase domain, alpha-beta hydrolase, Cell adhesion, Cell junction, Glycoprotein, Membrane, Postsynaptic cell membrane, Synapse, Transmembrane
Deposited on 2007-12-01, released 2007-12-18
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.185
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Neuroligin-1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Nlgn1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q62765
      • expression tag (568-571)
    • Uniprot Q62765 (Start-234)
    • Uniprot Q62765 (235-567)
    Domains in SCOPe 2.06: d3bixa1, d3bixa2
  • Chain 'B':
    Compound: Neuroligin-1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Nlgn1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q62765
      • expression tag (568-571)
    • Uniprot Q62765 (Start-234)
    • Uniprot Q62765 (235-567)
    Domains in SCOPe 2.06: d3bixb1, d3bixb2
  • Chain 'C':
    Compound: Neuroligin-1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Nlgn1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q62765
      • expression tag (568-571)
    • Uniprot Q62765 (Start-234)
    • Uniprot Q62765 (235-567)
    Domains in SCOPe 2.06: d3bixc1, d3bixc2
  • Chain 'D':
    Compound: Neuroligin-1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Nlgn1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q62765
      • expression tag (568-571)
    • Uniprot Q62765 (Start-234)
    • Uniprot Q62765 (235-567)
    Domains in SCOPe 2.06: d3bixd1, d3bixd2
  • Heterogens: NAG, NI, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3bixA (A:)
adpqklddvdplvttnfgkirgikkelnneilgpviqflgvpyaapptgehrfqppepps
pwsdirnatqfapvcpqniidgrlpevmlpvwftnnldvvssyvqdqsedclylniyvpt
eddirdsggpkpvmvyihggsymegtgnlydgsvlasygnvivitvnyrlgvlgflstgd
qaakgnyglldliqalrwtsenigffggdplritvfgsgaggscvnlltlshysekglfq
raiaqsgtalsswavsfqpakyarilatkvgcnvsdtvelveclqkkpykelvdqdvqpa
ryhiafgpvidgdvipddpqilmeqgeflnydimlgvnqgeglkfvenivdsddgvsasd
fdfavsnfvdnlygypegkdvlretikfmytdwadrhnpetrrktllalftdhqwvapav
atadlhsnfgsptyfyafyhhcqtdqvpawadaahgdevpyvlgipmigptelfpcnfsk
ndvmlsavvmtywtnfaktgdpnqpvpqdtkfihtkpnrfeevawtrysqkdqlylhigl
kprvkehyrankvnlwlelvphlhnlndhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bixA (A:)
dplvttnfgkirgikkelnneilgpviqflgvpyaapptgehrfqppeppspwsdirnat
qfapvcpqniidgrlpevmlpvwftnnldvvssyvqdqsedclylniyvptgpkpvmvyi
hggsymegtgnlydgsvlasygnvivitvnyrlgvlgflstgdqaakgnyglldliqalr
wtsenigffggdplritvfgsgaggscvnlltlshysekglfqraiaqsgtalsswavsf
qpakyarilatkvgcnvsdtvelveclqkkpykelvdqdvqparyhiafgpvidgdvipd
dpqilmeqgeflnydimlgvnqgeglkfvenivdsddgvsasdfdfavsnfvdnlygype
gkdvlretikfmytdwadrhnpetrrktllalftdhqwvapavatadlhsnfgsptyfya
fyhhcqtdqvpawadaahgdevpyvlgipmigptelfpcnfskndvmlsavvmtywtnfa
ktgdpnqpvpqdtkfihtkpnrfeevawtrysqkdqlylhiglkprvkehyrankvnlwl
elvphlhnlndhhhh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3bixB (B:)
adpqklddvdplvttnfgkirgikkelnneilgpviqflgvpyaapptgehrfqppepps
pwsdirnatqfapvcpqniidgrlpevmlpvwftnnldvvssyvqdqsedclylniyvpt
eddirdsggpkpvmvyihggsymegtgnlydgsvlasygnvivitvnyrlgvlgflstgd
qaakgnyglldliqalrwtsenigffggdplritvfgsgaggscvnlltlshysekglfq
raiaqsgtalsswavsfqpakyarilatkvgcnvsdtvelveclqkkpykelvdqdvqpa
ryhiafgpvidgdvipddpqilmeqgeflnydimlgvnqgeglkfvenivdsddgvsasd
fdfavsnfvdnlygypegkdvlretikfmytdwadrhnpetrrktllalftdhqwvapav
atadlhsnfgsptyfyafyhhcqtdqvpawadaahgdevpyvlgipmigptelfpcnfsk
ndvmlsavvmtywtnfaktgdpnqpvpqdtkfihtkpnrfeevawtrysqkdqlylhigl
kprvkehyrankvnlwlelvphlhnlndhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bixB (B:)
dplvttnfgkirgikkelnneilgpviqflgvpyaapptgehrfqppeppspwsdirnat
qfapvcpqniidgrlpevmlpvwftnnldvvssyvqdqsedclylniyvptgpkpvmvyi
hggsymegtgnlydgsvlasygnvivitvnyrlgvlgflstgdqaakgnyglldliqalr
wtsenigffggdplritvfgsgaggscvnlltlshysekglfqraiaqsgtalsswavsf
qpakyarilatkvgcnvsdtvelveclqkkpykelvdqdvqparyhiafgpvidgdvipd
dpqilmeqgeflnydimlgvnqgeglkfvenivdsddgvsasdfdfavsnfvdnlygype
gkdvlretikfmytdwadrhnpetrrktllalftdhqwvapavatadlhsnfgsptyfya
fyhhcqtdqvpawadaahgdevpyvlgipmigptelfpcnfskndvmlsavvmtywtnfa
ktgdpnqpvpqdtkfihtkpnrfeevawtrysqkdqlylhiglkprvkehyrankvnlwl
elvphlhnlndhhhh

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3bixC (C:)
adpqklddvdplvttnfgkirgikkelnneilgpviqflgvpyaapptgehrfqppepps
pwsdirnatqfapvcpqniidgrlpevmlpvwftnnldvvssyvqdqsedclylniyvpt
eddirdsggpkpvmvyihggsymegtgnlydgsvlasygnvivitvnyrlgvlgflstgd
qaakgnyglldliqalrwtsenigffggdplritvfgsgaggscvnlltlshysekglfq
raiaqsgtalsswavsfqpakyarilatkvgcnvsdtvelveclqkkpykelvdqdvqpa
ryhiafgpvidgdvipddpqilmeqgeflnydimlgvnqgeglkfvenivdsddgvsasd
fdfavsnfvdnlygypegkdvlretikfmytdwadrhnpetrrktllalftdhqwvapav
atadlhsnfgsptyfyafyhhcqtdqvpawadaahgdevpyvlgipmigptelfpcnfsk
ndvmlsavvmtywtnfaktgdpnqpvpqdtkfihtkpnrfeevawtrysqkdqlylhigl
kprvkehyrankvnlwlelvphlhnlndhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bixC (C:)
dplvttnfgkirgikkelnneilgpviqflgvpyaapptgehrfqppeppspwsdirnat
qfapvcpqniidgrlpevmlpvwftnnldvvssyvqdqsedclylniyvptgpkpvmvyi
hggsymegtgnlydgsvlasygnvivitvnyrlgvlgflstgdqaakgnyglldliqalr
wtsenigffggdplritvfgsgaggscvnlltlshysekglfqraiaqsgtalsswavsf
qpakyarilatkvgcnvsdtvelveclqkkpykelvdqdvqparyhiafgpvidgdvipd
dpqilmeqgeflnydimlgvnqgeglkfvenivdsddgvsasdfdfavsnfvdnlygype
gkdvlretikfmytdwadrhnpetrrktllalftdhqwvapavatadlhsnfgsptyfya
fyhhcqtdqvpawadaahgdevpyvlgipmigptelfpcnfskndvmlsavvmtywtnfa
ktgdpnqpvpqdtkfihtkpnrfeevawtrysqkdqlylhiglkprvkehyrankvnlwl
elvphlhnlndhhhh

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3bixD (D:)
adpqklddvdplvttnfgkirgikkelnneilgpviqflgvpyaapptgehrfqppepps
pwsdirnatqfapvcpqniidgrlpevmlpvwftnnldvvssyvqdqsedclylniyvpt
eddirdsggpkpvmvyihggsymegtgnlydgsvlasygnvivitvnyrlgvlgflstgd
qaakgnyglldliqalrwtsenigffggdplritvfgsgaggscvnlltlshysekglfq
raiaqsgtalsswavsfqpakyarilatkvgcnvsdtvelveclqkkpykelvdqdvqpa
ryhiafgpvidgdvipddpqilmeqgeflnydimlgvnqgeglkfvenivdsddgvsasd
fdfavsnfvdnlygypegkdvlretikfmytdwadrhnpetrrktllalftdhqwvapav
atadlhsnfgsptyfyafyhhcqtdqvpawadaahgdevpyvlgipmigptelfpcnfsk
ndvmlsavvmtywtnfaktgdpnqpvpqdtkfihtkpnrfeevawtrysqkdqlylhigl
kprvkehyrankvnlwlelvphlhnlndhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3bixD (D:)
dplvttnfgkirgikkelnneilgpviqflgvpyaapptgehrfqppeppspwsdirnat
qfapvcpqniidgrlpevmlpvwftnnldvvssyvqdqsedclylniyvptgpkpvmvyi
hggsymegtgnlydgsvlasygnvivitvnyrlgvlgflstgdqaakgnyglldliqalr
wtsenigffggdplritvfgsgaggscvnlltlshysekglfqraiaqsgtalsswavsf
qpakyarilatkvgcnvsdtvelveclqkkpykelvdqdvqparyhiafgpvidgdvipd
dpqilmeqgeflnydimlgvnqgeglkfvenivdsddgvsasdfdfavsnfvdnlygype
gkdvlretikfmytdwadrhnpetrrktllalftdhqwvapavatadlhsnfgsptyfya
fyhhcqtdqvpawadaahgdevpyvlgipmigptelfpcnfskndvmlsavvmtywtnfa
ktgdpnqpvpqdtkfihtkpnrfeevawtrysqkdqlylhiglkprvkehyrankvnlwl
elvphlhnlndhhhh