PDB entry 3bik

View 3bik on RCSB PDB site
Description: Crystal Structure of the PD-1/PD-L1 Complex
Class: immune system
Keywords: CO-STIMULATION, RECEPTOR-LIGAND COMPLEX, IMMUNOGLOBULIN-LIKE BETA-SANDWICH, T CELL, B CELL, PROGRAMMED DEATH, IMMUNE SYSTEM, TRANSMEMBRANE, INHIBITORY RECEPTOR, Glycoprotein, Immunoglobulin domain, Apoptosis
Deposited on 2007-11-30, released 2008-02-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: 0.214
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Programmed cell death 1 ligand 1
    Species: Homo sapiens [TaxId:9606]
    Gene: CD274, B7H1, PDCD1L1, PDCD1LG1, PDL1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Programmed cell death protein 1
    Species: Mus musculus [TaxId:10090]
    Gene: Pdcd1, Pd1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q02242
      • engineered (59)
    Domains in SCOPe 2.08: d3bikb_
  • Chain 'C':
    Compound: Programmed cell death protein 1
    Species: Mus musculus [TaxId:10090]
    Gene: Pdcd1, Pd1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q02242
      • engineered (59)
    Domains in SCOPe 2.08: d3bikc_
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3bikB (B:)
alevpngpwrsltfypawltvseganatftcslsnwsedlmlnwnrlspsnqtekqaafs
nglsqpvqdarfqiiqlpnrhdfhmnildtrrndsgiylcgaislhpkakieespgaelv
vteriletstryps

    Sequence, based on observed residues (ATOM records): (download) 
    >3bikB (B:)
rsltfypawltvseganatftcslsnwsedlmlnwnrlspsnqtekqaafsnglsqpvqd
arfqiiqlpnrhdfhmnildtrrndsgiylcgaislhpkakieespgaelvvteri

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3bikC (C:)
alevpngpwrsltfypawltvseganatftcslsnwsedlmlnwnrlspsnqtekqaafs
nglsqpvqdarfqiiqlpnrhdfhmnildtrrndsgiylcgaislhpkakieespgaelv
vteriletstryps

    Sequence, based on observed residues (ATOM records): (download) 
    >3bikC (C:)
gpwrsltfypawltvseganatftcslsnwsedlmlnwnrlspsnqtekqaafsnglsqp
vqdarfqiiqlpnrhdfhmnildtrrndsgiylcgaislhpkakieespgaelvvter