PDB entry 3bg0

View 3bg0 on RCSB PDB site
Description: Architecture of a Coat for the Nuclear Pore Membrane
Deposited on 2007-11-23, released 2008-01-01
The last revision was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 3.15 Å
R-factor: 0.252
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Protein SEC13 homolog
    Species: Homo sapiens [TaxId:9606]
    Gene: SEC13, D3S1231E, SEC13L1, SEC13R
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Nucleoporin NUP145
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: NUP145, RAT10
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Nucleoporin NUP145
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: NUP145, RAT10
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Protein SEC13 homolog
    Species: Homo sapiens [TaxId:9606]
    Gene: SEC13, D3S1231E, SEC13L1, SEC13R
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Protein SEC13 homolog
    Species: Homo sapiens [TaxId:9606]
    Gene: SEC13, D3S1231E, SEC13L1, SEC13R
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Nucleoporin NUP145
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: NUP145, RAT10
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Nucleoporin NUP145
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: NUP145, RAT10
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Protein SEC13 homolog
    Species: Homo sapiens [TaxId:9606]
    Gene: SEC13, D3S1231E, SEC13L1, SEC13R
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3bg0A (A:)
mvsvintvdtshedmihdaqmdyygtrlatcssdrsvkifdvrnggqiliadlrghegpv
wqvawahpmygnilascsydrkviiwreengtwekshehaghdssvnsvcwaphdyglil
acgssdgaislltytgegqwevkkinnahtigcnavswapavvpgslidhpsgqkpnyik
rfasggcdnliklwkeeedgqwkeeqkleahsdwvrdvawapsiglptstiascsqdgrv
fiwtcddassntwspkllhkfndvvwhvswsitanilavsggdnkvtlwkesvdgqwvci
sdvnkgqgsvsasvte

    Sequence, based on observed residues (ATOM records):
    >3bg0A (A:)
dmihdaqmdyygtrlatcssdrsvkifdvrnggqiliadlrghegpvwqvawahpmygni
lascsydrkviiwreengtwekshehaghdssvnsvcwaphdyglilacgssdgaisllt
ytgegqwevkkinnahtigcnavswapavvpgqkpnyikrfasggcdnliklwkeeedgq
wkeeqkleahsdwvrdvawapsiglptstiascsqdgrvfiwtcddassntwspkllhkf
ndvvwhvswsitanilavsggdnkvtlwkesvdgqwvcisdvn

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3bg0B (B:)
mgsshhhhhhsgdpfsecndeidnaklimkerrftasytfakfstgsmlltkdivgksgv
sikrlptelqrkflfddvyldkeiekvtiearksnpypqisessllfkdaldymektssd
ynlwklssilfdpvsypyktdndqvkmallkkerhcrltswivsqigpeieekirnssne
ieqiflylllndvvrasklaiesknghlsvlisylgsndprirdlaelqlqkwstggcsi
dkniskiykllsgspfeglfslkelesefswlcllnltlcygqideysleslvqshldkf
slpyddpigvifqlyaanenteklykevrqrtnaldvqfcwyliqtlrfngtrvfskets
deatfafaaqlefaqlhghslfvscflnddkaaedtikrlvmreitllrastndhilnrl
kipsqlifnaqalkdryegnyl

    Sequence, based on observed residues (ATOM records):
    >3bg0B (B:)
deidnaklimkerrftasytfakfstgsmlltkdivgksgvsikrlptelqrkflfddvy
ldkeiekvtiearksnpypqisessllfkdaldymektssdynlwklssilfdpvsypyk
tdndqvkmallkkerhcrltswivsqigpeieekirnssneieqiflylllndvvraskl
aiesknghlsvlisylgsndprirdlaelqlqkwstggcsidkniskiykllsgspfegl
fslkelesefswlcllnltlcygqideysleslvqshldkfslpyddpigvifqlyaane
nteklykevrqrtnaldvqfcwyliqtlrfngtrvfsketsdeatfafaaqlefaqlhgh
slfvscflnddkaaedtikrlvmreitllrastndhilnrlkipsqlifnaqalkdryeg
nyl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3bg0C (C:)
mgsshhhhhhsgdpfsecndeidnaklimkerrftasytfakfstgsmlltkdivgksgv
sikrlptelqrkflfddvyldkeiekvtiearksnpypqisessllfkdaldymektssd
ynlwklssilfdpvsypyktdndqvkmallkkerhcrltswivsqigpeieekirnssne
ieqiflylllndvvrasklaiesknghlsvlisylgsndprirdlaelqlqkwstggcsi
dkniskiykllsgspfeglfslkelesefswlcllnltlcygqideysleslvqshldkf
slpyddpigvifqlyaanenteklykevrqrtnaldvqfcwyliqtlrfngtrvfskets
deatfafaaqlefaqlhghslfvscflnddkaaedtikrlvmreitllrastndhilnrl
kipsqlifnaqalkdryegnyl

    Sequence, based on observed residues (ATOM records):
    >3bg0C (C:)
deidnaklimkerrftasytfakfstgsmlltkdisgvsikrlptelqrkflfddvyldk
eiekvtiearksnpypqisessllfkdaldymektssdynlwklssilfdpvsypyktdn
dqvkmallkkerhcrltswivsqigpeieekirnssneieqiflylllndvvrasklaie
sknghlsvlisylgsndprirdlaelqlqkwstggcsidkniskiykllsgspfeglfsl
kelesefswlcllnltlcygqideysleslvqshldkfslpyddpigvifqlyaanente
klykevrqrtnaldvqfcwyliqtlrfngtrvfsketsdeatfafaaqlefaqlhghslf
vscflnddkaaedtikrlvmreitllrastndhilnrlkipsqlifnaqalkdryegnyl

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3bg0D (D:)
mvsvintvdtshedmihdaqmdyygtrlatcssdrsvkifdvrnggqiliadlrghegpv
wqvawahpmygnilascsydrkviiwreengtwekshehaghdssvnsvcwaphdyglil
acgssdgaislltytgegqwevkkinnahtigcnavswapavvpgslidhpsgqkpnyik
rfasggcdnliklwkeeedgqwkeeqkleahsdwvrdvawapsiglptstiascsqdgrv
fiwtcddassntwspkllhkfndvvwhvswsitanilavsggdnkvtlwkesvdgqwvci
sdvnkgqgsvsasvte

    Sequence, based on observed residues (ATOM records):
    >3bg0D (D:)
dmihdaqmdyygtrlatcssdrsvkifdvrnggqiliadlrghegpvwqvawahpmygni
lascsydrkviiwreengtwekshehaghdssvnsvcwaphdyglilacgssdgaisllt
ytgegqwevkkinnahtigcnavswapavvpgqkpnyikrfasggcdnliklwkeeedgq
wkeeqkleahsdwvrdvawapsiglptstiascsqdgrvfiwtcddassntwspkllhkf
ndvvwhvswsitanilavsggdnkvtlwkesvdgqwvcisd

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3bg0E (E:)
mvsvintvdtshedmihdaqmdyygtrlatcssdrsvkifdvrnggqiliadlrghegpv
wqvawahpmygnilascsydrkviiwreengtwekshehaghdssvnsvcwaphdyglil
acgssdgaislltytgegqwevkkinnahtigcnavswapavvpgslidhpsgqkpnyik
rfasggcdnliklwkeeedgqwkeeqkleahsdwvrdvawapsiglptstiascsqdgrv
fiwtcddassntwspkllhkfndvvwhvswsitanilavsggdnkvtlwkesvdgqwvci
sdvnkgqgsvsasvte

    Sequence, based on observed residues (ATOM records):
    >3bg0E (E:)
dmihdaqmdyygtrlatcssdrsvkifdvrnggqiliadlrghegpvwqvawahpmygni
lascsydrkviiwreengtwekshehaghdssvnsvcwaphdyglilacgssdgaisllt
ytgegqwevkkinnahtigcnavswapavvpgqkpnyikrfasggcdnliklwkeeedgq
wkeeqkleahsdwvrdvawapsiglptstiascsqdgrvfiwtcddassntwspkllhkf
ndvvwhvswsitanilavsggdnkvtlwkesvdgqwvcisdvn

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3bg0F (F:)
mgsshhhhhhsgdpfsecndeidnaklimkerrftasytfakfstgsmlltkdivgksgv
sikrlptelqrkflfddvyldkeiekvtiearksnpypqisessllfkdaldymektssd
ynlwklssilfdpvsypyktdndqvkmallkkerhcrltswivsqigpeieekirnssne
ieqiflylllndvvrasklaiesknghlsvlisylgsndprirdlaelqlqkwstggcsi
dkniskiykllsgspfeglfslkelesefswlcllnltlcygqideysleslvqshldkf
slpyddpigvifqlyaanenteklykevrqrtnaldvqfcwyliqtlrfngtrvfskets
deatfafaaqlefaqlhghslfvscflnddkaaedtikrlvmreitllrastndhilnrl
kipsqlifnaqalkdryegnyl

    Sequence, based on observed residues (ATOM records):
    >3bg0F (F:)
deidnaklimkerrftasytfakfstgsmlltkdivgksgvsikrlptelqrkflfddvy
ldkeiekvtiearksnpypqisessllfkdaldymektssdynlwklssilfdpvsypyk
tdndqvkmallkkerhcrltswivsqigpeieekirnssneieqiflylllndvvraskl
aiesknghlsvlisylgsndprirdlaelqlqkwstggcsidkniskiykllsgspfegl
fslkelesefswlcllnltlcygqideysleslvqshldkfslpyddpigvifqlyaane
nteklykevrqrtnaldvqfcwyliqtlrfngtrvfsketsdeatfafaaqlefaqlhgh
slfvscflnddkaaedtikrlvmreitllrastndhilnrlkipsqlifnaqalkdryeg
nyl

  • Chain 'G':
    Sequence, based on SEQRES records:
    >3bg0G (G:)
mgsshhhhhhsgdpfsecndeidnaklimkerrftasytfakfstgsmlltkdivgksgv
sikrlptelqrkflfddvyldkeiekvtiearksnpypqisessllfkdaldymektssd
ynlwklssilfdpvsypyktdndqvkmallkkerhcrltswivsqigpeieekirnssne
ieqiflylllndvvrasklaiesknghlsvlisylgsndprirdlaelqlqkwstggcsi
dkniskiykllsgspfeglfslkelesefswlcllnltlcygqideysleslvqshldkf
slpyddpigvifqlyaanenteklykevrqrtnaldvqfcwyliqtlrfngtrvfskets
deatfafaaqlefaqlhghslfvscflnddkaaedtikrlvmreitllrastndhilnrl
kipsqlifnaqalkdryegnyl

    Sequence, based on observed residues (ATOM records):
    >3bg0G (G:)
deidnaklimkerrftasytfakfstgsmlltkdisgvsikrlptelqrkflfddvyldk
eiekvtiearksnpypqisessllfkdaldymektssdynlwklssilfdpvsypyktdn
dqvkmallkkerhcrltswivsqigpeieekirnssneieqiflylllndvvrasklaie
sknghlsvlisylgsndprirdlaelqlqkwstggcsidkniskiykllsgspfeglfsl
kelesefswlcllnltlcygqideysleslvqshldkfslpyddpigvifqlyaanente
klykevrqrtnaldvqfcwyliqtlrfngtrvfsketsdeatfafaaqlefaqlhghslf
vscflnddkaaedtikrlvmreitllrastndhilnrlkipsqlifnaqalkdryegnyl

  • Chain 'H':
    Sequence, based on SEQRES records:
    >3bg0H (H:)
mvsvintvdtshedmihdaqmdyygtrlatcssdrsvkifdvrnggqiliadlrghegpv
wqvawahpmygnilascsydrkviiwreengtwekshehaghdssvnsvcwaphdyglil
acgssdgaislltytgegqwevkkinnahtigcnavswapavvpgslidhpsgqkpnyik
rfasggcdnliklwkeeedgqwkeeqkleahsdwvrdvawapsiglptstiascsqdgrv
fiwtcddassntwspkllhkfndvvwhvswsitanilavsggdnkvtlwkesvdgqwvci
sdvnkgqgsvsasvte

    Sequence, based on observed residues (ATOM records):
    >3bg0H (H:)
dmihdaqmdyygtrlatcssdrsvkifdvrnggqiliadlrghegpvwqvawahpmygni
lascsydrkviiwreengtwekshehaghdssvnsvcwaphdyglilacgssdgaisllt
ytgegqwevkkinnahtigcnavswapavvpgqkpnyikrfasggcdnliklwkeeedgq
wkeeqkleahsdwvrdvawapsiglptstiascsqdgrvfiwtcddassntwspkllhkf
ndvvwhvswsitanilavsggdnkvtlwkesvdgqwvcisd