PDB entry 3bep

View 3bep on RCSB PDB site
Description: Structure of a sliding clamp on DNA
Class: transferase, transcription/DNA
Keywords: beta subunit, sliding clamp, E. coli polymerase III, DNA complex, TRANSFERASE, TRANSCRIPTION/DNA COMPLEX
Deposited on 2007-11-19, released 2008-01-29
The last revision prior to the SCOPe 2.05 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.92 Å
R-factor: 0.21
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase III subunit beta
    Species: Escherichia coli [TaxId:562]
    Gene: dnaN
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3bepa1, d3bepa2, d3bepa3
  • Chain 'B':
    Compound: DNA polymerase III subunit beta
    Species: Escherichia coli [TaxId:562]
    Gene: dnaN
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3bepb1, d3bepb2, d3bepb3
  • Chain 'C':
    Compound: DNA (5'-d(p*dcp*dcp*dcp*dap*dtp*dcp*dgp*dtp*dap*dt)-3')
  • Chain 'D':
    Compound: DNA (5'-d(*dtp*dtp*dtp*dtp*dap*dtp*dap*dcp*dgp*dap*dtp*dgp*dgp*dg)-3')
  • Heterogens: 5CY, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3bepA (A:)
mkftverehllkplqqvsgplggrptlpilgnlllqvadgtlsltgtdlememvarvalv
qphepgattvparkffdicrglpegaeiavqlegermlvrsgrsrfslstlpaadfpnld
dwqseveftlpqatmkrlieatqfsmahqdvryylngmlfetegeelrtvatdghrlavc
smpigqslpshsvivprkgvielmrmldggdnplrvqigsnnirahvgdfiftsklvdgr
fpdyrrvlpknpdkhleagcdllkqafaraailsnekfrgvrlyvsenqlkitannpeqe
eaeeildvtysgaemeigfnvsyvldvlnalkcenvrmmltdsvssvqiedaasqsaayv
vmpmrl

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3bepB (B:)
mkftverehllkplqqvsgplggrptlpilgnlllqvadgtlsltgtdlememvarvalv
qphepgattvparkffdicrglpegaeiavqlegermlvrsgrsrfslstlpaadfpnld
dwqseveftlpqatmkrlieatqfsmahqdvryylngmlfetegeelrtvatdghrlavc
smpigqslpshsvivprkgvielmrmldggdnplrvqigsnnirahvgdfiftsklvdgr
fpdyrrvlpknpdkhleagcdllkqafaraailsnekfrgvrlyvsenqlkitannpeqe
eaeeildvtysgaemeigfnvsyvldvlnalkcenvrmmltdsvssvqiedaasqsaayv
vmpmrl

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.