PDB entry 3bdy

View 3bdy on RCSB PDB site
Description: Dual specific bH1 Fab in complex with VEGF
Class: hormone
Keywords: Fab Complex, Angiogenesis, Developmental protein, Differentiation, Glycoprotein, Growth factor, Heparin-binding, Mitogen, Secreted, HORMONE
Deposited on 2007-11-15, released 2008-11-18
The last revision prior to the SCOPe 2.04 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.197
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: Fab Fragment -Heavy Chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 3BDY
  • Chain 'L':
    Compound: Fab Fragment -Light Chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 3BDY (0-End)
    Domains in SCOPe 2.04: d3bdyl1, d3bdyl2
  • Chain 'V':
    Compound: Vascular Endothelial Growth Factor A
    Species: Homo sapiens [TaxId:9606]
    Gene: VEGF, VEGFA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3bdyv_
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'H':
    No sequence available.

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >3bdyL (L:)
    diqmtqspsslsasvgdrvtitcrasqdiprsisgyvawyqqkpgkapklliywgsylys
    gvpsrfsgsgsgtdftltisslqpedfatyycqqhyttpptfgqgtkveikrtvaapsvf
    ifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysls
    stltlskadyekhkvyacevthqglsspvtksfnrgec
    

    Sequence, based on observed residues (ATOM records): (download)
    >3bdyL (L:)
    diqmtqspsslsasvgdrvtitcrasqdiprsisgyvawyqqkpgkapklliywgsylys
    gvpsrfsgsgsgtdftltisslqpedfatyycqqhyttpptfgqgtkveikrtvaapsvf
    ifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysls
    stltlskadyekhkvyacevthqglsspvtksfnrge
    

  • Chain 'V':
    Sequence, based on SEQRES records: (download)
    >3bdyV (V:)
    gqnhhevvkfmdvyqrsychpietlvdifqeypdeieyifkpscvplmrcggccndegle
    cvpteesnitmqimrikphqgqhigemsflqhnkcecrpkkd
    

    Sequence, based on observed residues (ATOM records): (download)
    >3bdyV (V:)
    vvkfmdvyqrsychpietlvdifqeypdeieyifkpscvplmrcggccndeglecvptee
    snitmqimrikphqgqhigemsflqhnkcecrpkk