PDB entry 3bdy
View 3bdy on RCSB PDB site
Description: Dual specific bH1 Fab in complex with VEGF
Class: hormone
Keywords: Fab Complex, Angiogenesis, Developmental protein, Differentiation, Glycoprotein, Growth factor, Heparin-binding, Mitogen, Secreted, HORMONE
Deposited on
2007-11-15, released
2008-11-18
The last revision prior to the SCOPe 2.03 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.197
AEROSPACI score: 0.33
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'H':
Compound: Fab Fragment -Heavy Chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: Fab Fragment -Light Chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3bdyl1, d3bdyl2 - Chain 'V':
Compound: Vascular Endothelial Growth Factor A
Species: Homo sapiens [TaxId:9606]
Gene: VEGF, VEGFA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3bdyv_ - Heterogens: GOL, HOH
PDB Chain Sequences:
- Chain 'H':
No sequence available.
- Chain 'L':
Sequence, based on SEQRES records: (download)
>3bdyL (L:)
diqmtqspsslsasvgdrvtitcrasqdiprsisgyvawyqqkpgkapklliywgsylys
gvpsrfsgsgsgtdftltisslqpedfatyycqqhyttpptfgqgtkveikrtvaapsvf
ifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysls
stltlskadyekhkvyacevthqglsspvtksfnrgec
Sequence, based on observed residues (ATOM records): (download)
>3bdyL (L:)
diqmtqspsslsasvgdrvtitcrasqdiprsisgyvawyqqkpgkapklliywgsylys
gvpsrfsgsgsgtdftltisslqpedfatyycqqhyttpptfgqgtkveikrtvaapsvf
ifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysls
stltlskadyekhkvyacevthqglsspvtksfnrge
- Chain 'V':
Sequence, based on SEQRES records: (download)
>3bdyV (V:)
gqnhhevvkfmdvyqrsychpietlvdifqeypdeieyifkpscvplmrcggccndegle
cvpteesnitmqimrikphqgqhigemsflqhnkcecrpkkd
Sequence, based on observed residues (ATOM records): (download)
>3bdyV (V:)
vvkfmdvyqrsychpietlvdifqeypdeieyifkpscvplmrcggccndeglecvptee
snitmqimrikphqgqhigemsflqhnkcecrpkk