PDB entry 3bdp

View 3bdp on RCSB PDB site
Description: DNA polymerase I/DNA complex
Class: transferase/DNA
Keywords: bacillus stearothermophilus DNA polymerase, bf thermophilus polymerase, complex (nucleotidyltransferase/DNA)
Deposited on 1997-11-17, released 1999-01-13
The last revision prior to the SCOP 1.75 freeze date was dated 1999-01-13, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.25
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein (DNA polymerase I)
    Species: Bacillus stearothermophilus
    Database cross-references and differences (RAF-indexed):
    • Uniprot P52026 (0-579)
      • conflict (1)
      • conflict (114)
      • conflict (159)
      • conflict (208)
      • conflict (215)
      • conflict (253)
      • conflict (526)
    Domains in SCOP 1.75: d3bdpa1, d3bdpa2
  • Chain 'P':
    Compound: DNA (5'-d(*gp*cp*ap*tp*gp*ap*tp*gp*cp*2dt)-3')
  • Chain 'T':
    Compound: DNA (5'-d(*ap*gp*cp*ap*tp*cp*ap*tp*gp*c)-3')
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3bdpA (A:)
aamaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpq
fvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvraaakm
kqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllve
leqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgv
ilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyiegllkvvr
pdtkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwlifaadysq
ielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivygi
sdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpdi
tsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqvhdelilea
pkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak

  • Chain 'P':
    No sequence available.

  • Chain 'T':
    No sequence available.