PDB entry 3bbp

View 3bbp on RCSB PDB site
Description: rab6-gtp:gcc185 rab binding domain complex
Deposited on 2007-11-09, released 2008-02-05
The last revision was dated 2021-10-20, with a file datestamp of 2021-10-15.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.228
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ras-related protein Rab-6A
    Species: Homo sapiens [TaxId:9606]
    Gene: RAB6A, RAB6
    Database cross-references and differences (RAF-indexed):
    • Uniprot P20340 (3-208)
      • expression tag (0-2)
      • engineered mutation (74)
      • expression tag (209-210)
  • Chain 'B':
    Compound: Ras-related protein Rab-6A
    Species: Homo sapiens [TaxId:9606]
    Gene: RAB6A, RAB6
    Database cross-references and differences (RAF-indexed):
    • Uniprot P20340 (3-208)
      • expression tag (0-2)
      • engineered mutation (74)
      • expression tag (209-210)
  • Chain 'C':
    Compound: Ras-related protein Rab-6A
    Species: Homo sapiens [TaxId:9606]
    Gene: RAB6A, RAB6
    Database cross-references and differences (RAF-indexed):
    • Uniprot P20340 (3-208)
      • expression tag (0-2)
      • engineered mutation (74)
      • expression tag (209-210)
  • Chain 'D':
    Compound: GRIP and coiled-coil domain-containing protein 2
    Species: Homo sapiens [TaxId:9606]
    Gene: GCC2, KIAA0336, RANBP2L4
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8IWJ2 (5-70)
      • expression tag (0-4)
  • Chain 'E':
    Compound: GRIP and coiled-coil domain-containing protein 2
    Species: Homo sapiens [TaxId:9606]
    Gene: GCC2, KIAA0336, RANBP2L4
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8IWJ2 (5-70)
      • expression tag (0-4)
  • Chain 'F':
    Compound: GRIP and coiled-coil domain-containing protein 2
    Species: Homo sapiens [TaxId:9606]
    Gene: GCC2, KIAA0336, RANBP2L4
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8IWJ2 (5-70)
      • expression tag (0-4)
  • Heterogens: MG, GTP

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3bbpA (A:)
gpgmstggdfgnplrkfklvflgeqsvgktslitrfmydsfdntyqatigidflsktmyl
edrtvrlqlwdtaglerfrslipsyirdstvavvvyditnvnsfqqttkwiddvrtergs
dviimlvgnktdladkrqvsieegerkakelnvmfietsakagynvkqlfrrvaaalpgm
estqdrsredmidiklekpqeqpvseggcll

    Sequence, based on observed residues (ATOM records):
    >3bbpA (A:)
fklvflgeqsvgktslitrfmydsfdntyqatigidflsktmyledrtvrlqlwdtagle
rfrslipsyirdstvavvvyditnvnsfqqttkwiddvrtergsdviimlvgnktdladk
rqvsieegerkakelnvmfietsakagynvkqlfrrvaaal

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3bbpB (B:)
gpgmstggdfgnplrkfklvflgeqsvgktslitrfmydsfdntyqatigidflsktmyl
edrtvrlqlwdtaglerfrslipsyirdstvavvvyditnvnsfqqttkwiddvrtergs
dviimlvgnktdladkrqvsieegerkakelnvmfietsakagynvkqlfrrvaaalpgm
estqdrsredmidiklekpqeqpvseggcll

    Sequence, based on observed residues (ATOM records):
    >3bbpB (B:)
fklvflgeqsvgktslitrfmydsfdntyqatigidflsktmyledrtvrlqlwdtagle
rfrslipsyirdstvavvvyditnvnsfqqttkwiddvrtergsdviimlvgnktdladk
rqvsieegerkakelnvmfietsakagynvkqlfrrvaaal

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3bbpC (C:)
gpgmstggdfgnplrkfklvflgeqsvgktslitrfmydsfdntyqatigidflsktmyl
edrtvrlqlwdtaglerfrslipsyirdstvavvvyditnvnsfqqttkwiddvrtergs
dviimlvgnktdladkrqvsieegerkakelnvmfietsakagynvkqlfrrvaaalpgm
estqdrsredmidiklekpqeqpvseggcll

    Sequence, based on observed residues (ATOM records):
    >3bbpC (C:)
fklvflgeqsvgktslitrfmydsfdntyqatigidflsktmyledrtvrlqlwdtagle
rfrslipsyirdstvavvvyditnvnsfqqttkwiddvrtergsdviimlvgnktdladk
rqvsieegerkakelnvmfietsakagynvkqlfrrvaaal

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3bbpD (D:)
gplgslepplwhaeftkeelvqklssttksadhlngllreteatnailmeqikllkseir
rlernqereks

    Sequence, based on observed residues (ATOM records):
    >3bbpD (D:)
ksadhlngllreteatnailmeqikllkseirrlernq

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3bbpE (E:)
gplgslepplwhaeftkeelvqklssttksadhlngllreteatnailmeqikllkseir
rlernqereks

    Sequence, based on observed residues (ATOM records):
    >3bbpE (E:)
sadhlngllreteatnailmeqikllkseirrlernq

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3bbpF (F:)
gplgslepplwhaeftkeelvqklssttksadhlngllreteatnailmeqikllkseir
rlernqereks

    Sequence, based on observed residues (ATOM records):
    >3bbpF (F:)
llreteatnailmeqikllkseirrlernq