PDB entry 3bbd

View 3bbd on RCSB PDB site
Description: M. jannaschii Nep1 complexed with S-adenosyl-homocysteine
Class: transferase
Keywords: methyltransferase, ribosome biogenesis, S-adenosyl-methionine, S-adenosyl-homocysteine, rRNA processing, TRANSFERASE
Deposited on 2007-11-09, released 2008-02-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.182
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ribosome biogenesis protein NEP1-like
    Species: Methanocaldococcus jannaschii [TaxId:2190]
    Gene: Nep1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bbda1
  • Chain 'B':
    Compound: Ribosome biogenesis protein NEP1-like
    Species: Methanocaldococcus jannaschii [TaxId:2190]
    Gene: Nep1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bbdb_
  • Heterogens: SAH, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3bbdA (A:)
mtyniilaksalelipeeiknkirksrvykydildsnyhykameklkdkemrgrpdiihi
sllnildspinhekklniyihtyddkvlkinpetrlprnyfrflgvmekvlkgernhlik
meektledllneinakkiaimtktgklthpkllkeydtfiiggfpygklkinkekvfgdi
keisiynkglmawtvcgiicyslsf

    Sequence, based on observed residues (ATOM records): (download) 
    >3bbdA (A:)
tyniilaksalelipeeiknkirksrvykydildsnyhykameklkdkemrgrpdiihis
llnildspinhekklniyihtyddkvlkinpetrlprnyfrflgvmekvlkgernhlikm
eektledllneinakkiaimtktgklthpkllkeydtfiiggfpygklkinkekvfgdik
eisiynkglmawtvcgiicyslsf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3bbdB (B:)
mtyniilaksalelipeeiknkirksrvykydildsnyhykameklkdkemrgrpdiihi
sllnildspinhekklniyihtyddkvlkinpetrlprnyfrflgvmekvlkgernhlik
meektledllneinakkiaimtktgklthpkllkeydtfiiggfpygklkinkekvfgdi
keisiynkglmawtvcgiicyslsf

    Sequence, based on observed residues (ATOM records): (download) 
    >3bbdB (B:)
tyniilaksalelipeeiknkirksrvykydildsnyhykameklkdkemrgrpdiihis
llnildspinhekklniyihtyddkvlkinpetrlprnyfrflgvmekvlkgernhlikm
eektledllneinakkiaimtktgklthpkllkeydtfiiggfpygklkinkekvfgdik
eisiynkglmawtvcgiicyslsf