PDB entry 3b9k
View 3b9k on RCSB PDB site
Description: Crystal structure of CD8alpha-beta in complex with YTS 156.7 FAB
Class: immune system
Keywords: Immunoglobulin domain, V-set, IgSF dimer, Glycoprotein, Immune response, Membrane, Transmembrane, IMMUNE SYSTEM
Deposited on
2007-11-05, released
2008-11-11
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-07-29, with a file datestamp of
2020-07-04.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.23
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: T-cell surface glycoprotein CD8 alpha chain
Species: Mus musculus [TaxId:10090]
Gene: Cd8a, Lyt-2, Lyt2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3b9ka_ - Chain 'B':
Compound: T-cell surface glycoprotein CD8 beta chain
Species: Mus musculus [TaxId:10090]
Gene: Cd8b, Cd8b1, Ly-3, Lyt-3, Lyt3
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3b9kb_ - Chain 'C':
Compound: Fab light chain
Species: rattus rattus [TaxId:10117]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3b9kc1, d3b9kc2 - Chain 'D':
Compound: Fab heavy chain
Species: rattus rattus [TaxId:10117]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3b9kd_ - Chain 'E':
Compound: T-cell surface glycoprotein CD8 alpha chain
Species: Mus musculus [TaxId:10090]
Gene: Cd8a, Lyt-2, Lyt2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3b9ke_ - Chain 'F':
Compound: T-cell surface glycoprotein CD8 beta chain
Species: Mus musculus [TaxId:10090]
Gene: Cd8b, Cd8b1, Ly-3, Lyt-3, Lyt3
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3b9kf_ - Chain 'H':
Compound: Fab heavy chain
Species: rattus rattus [TaxId:10117]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3b9kh_ - Chain 'L':
Compound: Fab light chain
Species: rattus rattus [TaxId:10117]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3b9kl1, d3b9kl2 - Heterogens: NAG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3b9kA (A:)
kpqapelrifpkkmdaelgqkvdlvcevlgsvsqgcswlfqnsssklpqptfvvymassh
nkitwdeklnssklfsamrdtnnkyvltlnkfskenegyyfcsvisnsvmyfssvvpvlq
kvnssadlvpr
Sequence, based on observed residues (ATOM records): (download)
>3b9kA (A:)
apelrifpkkmdaelgqkvdlvcevlgsvsqgcswlfqnsssklpqptfvvymasshnki
twdeklnssklfsamrdtnnkyvltlnkfskenegyyfcsvisnsvmyfssvvpvlqk
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3b9kB (B:)
liqtpssllvqtnhtakmscevksiskltsiywlrerqdpkdkyfeflaswssskgvlyg
esvdkkrniilessdsrrpflsimnvkpedsdfyfcatvgspkmvfgtgtkltvvdvssa
dlvpr
Sequence, based on observed residues (ATOM records): (download)
>3b9kB (B:)
liqtpssllvqtnhtakmscevksiskltsiywlrerqdpkdkyfeflaswssskgvlyg
esvdkkrniilessdsrrpflsimnvkpedsdfyfcatvgspkmvfgtgtkltvvdv
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>3b9kC (C:)
dikmtqspaslsaslgdkvtitcqasqnidkyiawyqqkpgkaprqlihytstlvsgtps
rfsgsgsgrdytfsissvesediasyyclqydtlytfgagtklelkradaaptvsifpps
meqltsggatvvcfvnnfyprdisvkwkidgseqrdgvldsvtdqdskdstysmsstlsl
tkveyerhnlytcevvhktssspvvksfnrgec
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>3b9kD (D:)
qvrlqesgpglvqpsqtlsltcsvsgfslisdsvhwvrqppgkglewmggiwadgsteyn
salksrlsisrdtsksqgflkmnslqtddtaiyfctsnresyyfdywgqgtmvtvssaqt
tapsvyplapgcgdttsstvtlgclvkgyfpepvtvtwnsgalssdvhtfpavlqsglyt
ltssvtsstwpsqtvtcnvahpasstkvdkavea
- Chain 'E':
Sequence, based on SEQRES records: (download)
>3b9kE (E:)
kpqapelrifpkkmdaelgqkvdlvcevlgsvsqgcswlfqnsssklpqptfvvymassh
nkitwdeklnssklfsamrdtnnkyvltlnkfskenegyyfcsvisnsvmyfssvvpvlq
kvnssadlvpr
Sequence, based on observed residues (ATOM records): (download)
>3b9kE (E:)
apelrifpkkmdaelgqkvdlvcevlgsvsqgcswlfqnsssklpqptfvvymasshnki
twdeklnssklfsamrdtnnkyvltlnkfskenegyyfcsvisnsvmyfssvvpvlqk
- Chain 'F':
Sequence, based on SEQRES records: (download)
>3b9kF (F:)
liqtpssllvqtnhtakmscevksiskltsiywlrerqdpkdkyfeflaswssskgvlyg
esvdkkrniilessdsrrpflsimnvkpedsdfyfcatvgspkmvfgtgtkltvvdvssa
dlvpr
Sequence, based on observed residues (ATOM records): (download)
>3b9kF (F:)
liqtpssllvqtnhtakmscevksiskltsiywlrerqdpkdkyfeflaswssskgvlyg
esvdkkrniilessdsrrpflsimnvkpedsdfyfcatvgspkmvfgtgtkltvvdv
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>3b9kH (H:)
qvrlqesgpglvqpsqtlsltcsvsgfslisdsvhwvrqppgkglewmggiwadgsteyn
salksrlsisrdtsksqgflkmnslqtddtaiyfctsnresyyfdywgqgtmvtvssaqt
tapsvyplapgcgdttsstvtlgclvkgyfpepvtvtwnsgalssdvhtfpavlqsglyt
ltssvtsstwpsqtvtcnvahpasstkvdkavea
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>3b9kL (L:)
dikmtqspaslsaslgdkvtitcqasqnidkyiawyqqkpgkaprqlihytstlvsgtps
rfsgsgsgrdytfsissvesediasyyclqydtlytfgagtklelkradaaptvsifpps
meqltsggatvvcfvnnfyprdisvkwkidgseqrdgvldsvtdqdskdstysmsstlsl
tkveyerhnlytcevvhktssspvvksfnrgec