PDB entry 3b94

View 3b94 on RCSB PDB site
Description: Crystal structure of human GITRL
Class: cytokine
Keywords: symmetric trimer, asymmetric trimer, tetramer of trimers, P63 spacegroup, Cytokine, Glycoprotein, Membrane, Signal-anchor, Transmembrane
Deposited on 2007-11-02, released 2008-02-12
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.221
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Tumor necrosis factor ligand superfamily member 18
    Species: Homo sapiens [TaxId:9606]
    Gene: TNFSF18, AITRL, GITRL, TL6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3b94a_
  • Chain 'B':
    Compound: Tumor necrosis factor ligand superfamily member 18
    Species: Homo sapiens [TaxId:9606]
    Gene: TNFSF18, AITRL, GITRL, TL6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3b94b_
  • Chain 'C':
    Compound: Tumor necrosis factor ligand superfamily member 18
    Species: Homo sapiens [TaxId:9606]
    Gene: TNFSF18, AITRL, GITRL, TL6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3b94c_
  • Chain 'D':
    Compound: Tumor necrosis factor ligand superfamily member 18
    Species: Homo sapiens [TaxId:9606]
    Gene: TNFSF18, AITRL, GITRL, TL6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3b94d_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3b94A (A:)
    gamasqletakepcmakfgplpskwqmasseppcvnkvsdwkleilqnglyliygqvapn
    anyndvapfevrlyknkdmiqtltnkskiqnvggtyelhvgdtidlifnsehqvlknnty
    wgiillanpqfis
    

    Sequence, based on observed residues (ATOM records): (download)
    >3b94A (A:)
    epcmakfgplpskwqmasseppcvnkvsdwkleilqnglyliygqvafevrlyknkdmiq
    tltnkqnvggtyelhvgdtidlifnlknntywgiillanpqf
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3b94B (B:)
    gamasqletakepcmakfgplpskwqmasseppcvnkvsdwkleilqnglyliygqvapn
    anyndvapfevrlyknkdmiqtltnkskiqnvggtyelhvgdtidlifnsehqvlknnty
    wgiillanpqfis
    

    Sequence, based on observed residues (ATOM records): (download)
    >3b94B (B:)
    pcmakfgplpskwqmasseppcvnkvsdwkleilqnglyliygqvapndvapfevrlykn
    kdmiqtltnkskiqnvggtyelhvgdtidlifnsevlknntywgiillanpqf
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3b94C (C:)
    gamasqletakepcmakfgplpskwqmasseppcvnkvsdwkleilqnglyliygqvapn
    anyndvapfevrlyknkdmiqtltnkskiqnvggtyelhvgdtidlifnsehqvlknnty
    wgiillanpqfis
    

    Sequence, based on observed residues (ATOM records): (download)
    >3b94C (C:)
    pcmakfgplpskwqmasseppcvnkvsdwkleilqnglyliygqvapfevrlyknkdmiq
    tltnkiqnvggtyelhvgdtidlifntywgiillanpqfi
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3b94D (D:)
    gamasqletakepcmakfgplpskwqmasseppcvnkvsdwkleilqnglyliygqvapn
    anyndvapfevrlyknkdmiqtltnkskiqnvggtyelhvgdtidlifnsehqvlknnty
    wgiillanpqfis
    

    Sequence, based on observed residues (ATOM records): (download)
    >3b94D (D:)
    epcmakfgplpskwqmasseppcvnkvsdwkleilqnglyliygqvapnaevrlyknkdm
    iqtltnkskiqnvggtyelhvgdtidlifnsehqvlknntywgiillanpqf