PDB entry 3b8x

View 3b8x on RCSB PDB site
Description: Crystal structure of GDP-4-keto-6-deoxymannose-3-dehydratase (ColD) H188N mutant with bound GDP-perosamine
Class: transferase
Keywords: aspartate aminotransferase, colitose, perosamine, o-antigen, PLP, pyridoxal phosphate,, TRANSFERASE
Deposited on 2007-11-02, released 2007-11-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.177
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pyridoxamine 5-phosphate-dependent dehydrase
    Species: Escherichia coli [TaxId:244320]
    Gene: wbdK
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9F118 (Start-389)
      • engineered (189)
    Domains in SCOPe 2.08: d3b8xa_
  • Chain 'B':
    Compound: Pyridoxamine 5-phosphate-dependent dehydrase
    Species: Escherichia coli [TaxId:244320]
    Gene: wbdK
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9F118 (2-389)
      • engineered (189)
    Domains in SCOPe 2.08: d3b8xb_
  • Heterogens: NA, G4M, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3b8xA (A:)
ghminyplasstwddleykaiqsvldskmftmgeyvkqyetqfaktfgskyavmvssgst
anllmiaalfftkkprlkkgdeiivpavswsttyyplqqyglrvkfvdidintlnidies
lkeavtdstkailtvnllgnpnnfdeinkiiggrdiilledncesmgatfnnkcagtfgl
mgtfssfysnhiatmeggcivtddeeiyhillcirahgwtrnlpkknkvtgvksddqfee
sfkfvlpgynvrplemsgaigieqlkklprfisvrrknaeyfldkfkdhpyldvqqetge
sswfgfsfiikkdsgvirkqlvenlnsagiecrpivtgnflkntdvlkyfdytvhnnvdn
aeyldknglfvgnhqielfdeidylrevlk

    Sequence, based on observed residues (ATOM records): (download) 
    >3b8xA (A:)
nyplasstwddleykaiqsvldskmftmgeyvkqyetqfaktfgskyavmvssgstanll
miaalfftkkprlkkgdeiivpavswsttyyplqqyglrvkfvdidintlnidieslkea
vtdstkailtvnllgnpnnfdeinkiiggrdiilledncesmgatfnnkcagtfglmgtf
ssfysnhiatmeggcivtddeeiyhillcirahgwtrnlpkknkvtgvksddqfeesfkf
vlpgynvrplemsgaigieqlkklprfisvrrknaeyfldkfkdhpyldvqqetgesswf
gfsfiikkdsgvirkqlvenlnsagiecrpivtgnflkntdvlkyfdytvhnnvdnaeyl
dknglfvgnhqielfdeidylrevlk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3b8xB (B:)
ghminyplasstwddleykaiqsvldskmftmgeyvkqyetqfaktfgskyavmvssgst
anllmiaalfftkkprlkkgdeiivpavswsttyyplqqyglrvkfvdidintlnidies
lkeavtdstkailtvnllgnpnnfdeinkiiggrdiilledncesmgatfnnkcagtfgl
mgtfssfysnhiatmeggcivtddeeiyhillcirahgwtrnlpkknkvtgvksddqfee
sfkfvlpgynvrplemsgaigieqlkklprfisvrrknaeyfldkfkdhpyldvqqetge
sswfgfsfiikkdsgvirkqlvenlnsagiecrpivtgnflkntdvlkyfdytvhnnvdn
aeyldknglfvgnhqielfdeidylrevlk

    Sequence, based on observed residues (ATOM records): (download) 
    >3b8xB (B:)
minyplasstwddleykaiqsvldskmftmgeyvkqyetqfaktfgskyavmvssgstan
llmiaalfftkkprlkkgdeiivpavswsttyyplqqyglrvkfvdidintlnidieslk
eavtdstkailtvnllgnpnnfdeinkiiggrdiilledncesmgatfnnkcagtfglmg
tfssfysnhiatmeggcivtddeeiyhillcirahgwtrnlpkknkvtgvksddqfeesf
kfvlpgynvrplemsgaigieqlkklprfisvrrknaeyfldkfkdhpyldvqqetgess
wfgfsfiikkdsgvirkqlvenlnsagiecrpivtgnflkntdvlkyfdytvhnnvdnae
yldknglfvgnhqielfdeidylrevlk