PDB entry 3b6g
View 3b6g on RCSB PDB site
Description: Nucleosome core particle treated with oxaliplatin
Class: structural protein/DNA
Keywords: nucleosome, chromatin, platinum adduct, oxaliplatin, anti-cancer, drug, Acetylation, Chromosomal protein, DNA-binding, Methylation, Nucleosome core, Nucleus, Phosphorylation, Ubl conjugation, STRUCTURAL PROTEIN/DNA COMPLEX
Deposited on
2007-10-29, released
2007-12-25
The last revision prior to the SCOP 1.75 freeze date was dated
2008-07-01, with a file datestamp of
2008-06-27.
Experiment type: XRAY
Resolution: 3.45 Å
R-factor: 0.341
AEROSPACI score: 0.01
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Histone H3.2
Species: Xenopus laevis [TaxId:8355]
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d3b6ga1 - Chain 'B':
Compound: histone h4
Species: Xenopus laevis [TaxId:8355]
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d3b6gb1 - Chain 'C':
Compound: histone h2a
Species: Xenopus laevis [TaxId:8355]
Gene: LOC494591
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d3b6gc1 - Chain 'D':
Compound: Histone H2B 1.1
Species: Xenopus laevis [TaxId:8355]
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d3b6gd1 - Chain 'E':
Compound: Histone H3.2
Species: Xenopus laevis [TaxId:8355]
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d3b6ge1 - Chain 'F':
Compound: histone h4
Species: Xenopus laevis [TaxId:8355]
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d3b6gf1 - Chain 'G':
Compound: histone h2a
Species: Xenopus laevis [TaxId:8355]
Gene: LOC494591
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d3b6gg1 - Chain 'H':
Compound: Histone H2B 1.1
Species: Xenopus laevis [TaxId:8355]
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d3b6gh1 - Chain 'I':
Compound: 147-mer DNA
Species: Homo sapiens [TaxId:9606]
- Chain 'J':
Compound: 147-mer DNA
Species: Homo sapiens [TaxId:9606]
- Heterogens: MN
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3b6gA (A:)
artkqtarkstggkaprkqlatkaarksapatggvkkphryrpgtvalreirryqkstel
lirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakrvtim
pkdiqlarrirgera
Sequence, based on observed residues (ATOM records): (download)
>3b6gA (A:)
ggvkkphryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmal
qeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3b6gB (B:)
sgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkv
flenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg
Sequence, based on observed residues (ATOM records): (download)
>3b6gB (B:)
dniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakrktvta
mdvvyalkrqgrtlygfgg
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3b6gC (C:)
sgrgkqggktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleylta
eilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt
essksksk
Sequence, based on observed residues (ATOM records): (download)
>3b6gC (C:)
ktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardnk
ktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3b6gD (D:)
pepaksapapkkgskkavtktqkkdgkkrrktrkesyaiyvykvlkqvhpdtgisskams
imnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtk
ytsak
Sequence, based on observed residues (ATOM records): (download)
>3b6gD (D:)
dgkkrrktrkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahyn
krstitsreiqtavrlllpgelakhavsegtkavtkytsak
- Chain 'E':
Sequence, based on SEQRES records: (download)
>3b6gE (E:)
artkqtarkstggkaprkqlatkaarksapatggvkkphryrpgtvalreirryqkstel
lirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakrvtim
pkdiqlarrirgera
Sequence, based on observed residues (ATOM records): (download)
>3b6gE (E:)
atggvkkphryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavm
alqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera
- Chain 'F':
Sequence, based on SEQRES records: (download)
>3b6gF (F:)
sgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkv
flenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg
Sequence, based on observed residues (ATOM records): (download)
>3b6gF (F:)
krhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtyteh
akrktvtamdvvyalkrqgrtlygfgg
- Chain 'G':
Sequence, based on SEQRES records: (download)
>3b6gG (G:)
sgrgkqggktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleylta
eilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt
essksksk
Sequence, based on observed residues (ATOM records): (download)
>3b6gG (G:)
kaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaard
nkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkte
- Chain 'H':
Sequence, based on SEQRES records: (download)
>3b6gH (H:)
pepaksapapkkgskkavtktqkkdgkkrrktrkesyaiyvykvlkqvhpdtgisskams
imnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtk
ytsak
Sequence, based on observed residues (ATOM records): (download)
>3b6gH (H:)
kkrrktrkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkr
stitsreiqtavrlllpgelakhavsegtkavtkytsak
- Chain 'I':
No sequence available.
- Chain 'J':
No sequence available.