PDB entry 3b59

View 3b59 on RCSB PDB site
Description: crystal structure of the mn(ii)-bound glyoxalase from novosphingobium aromaticivorans
Deposited on 2007-10-25, released 2007-11-06
The last revision was dated 2021-02-03, with a file datestamp of 2021-01-29.
Experiment type: XRAY
Resolution: 2.53 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glyoxalase/bleomycin resistance protein/dioxygenase
    Species: Novosphingobium aromaticivorans [TaxId:279238]
    Gene: Saro_0713
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2GAG3 (3-301)
      • expression tag (2)
      • expression tag (302)
  • Chain 'B':
    Compound: Glyoxalase/bleomycin resistance protein/dioxygenase
    Species: Novosphingobium aromaticivorans [TaxId:279238]
    Gene: Saro_0713
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2GAG3 (3-301)
      • expression tag (2)
      • expression tag (302)
  • Chain 'C':
    Compound: Glyoxalase/bleomycin resistance protein/dioxygenase
    Species: Novosphingobium aromaticivorans [TaxId:279238]
    Gene: Saro_0713
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2GAG3 (3-301)
      • expression tag (2)
      • expression tag (302)
  • Chain 'D':
    Compound: Glyoxalase/bleomycin resistance protein/dioxygenase
    Species: Novosphingobium aromaticivorans [TaxId:279238]
    Gene: Saro_0713
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2GAG3 (3-301)
      • expression tag (2)
      • expression tag (302)
  • Chain 'E':
    Compound: Glyoxalase/bleomycin resistance protein/dioxygenase
    Species: Novosphingobium aromaticivorans [TaxId:279238]
    Gene: Saro_0713
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2GAG3 (3-301)
      • expression tag (2)
      • expression tag (302)
  • Chain 'F':
    Compound: Glyoxalase/bleomycin resistance protein/dioxygenase
    Species: Novosphingobium aromaticivorans [TaxId:279238]
    Gene: Saro_0713
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2GAG3 (3-301)
      • expression tag (2)
      • expression tag (302)
  • Heterogens: MN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3b59A (A:)
mslsrvteiryvgygvkdfdaekafyadvwglepvgedannawfkaqgadehhvvqlrra
denridvialaadsrsdvdalrasveaagckvasepavlatpgggygfrffspdgllfev
ssdvakgakrdlarwegvpvkishivlhspnhqdmvkfftdvlgfkvsdwlgdfmcflrc
nsahhriailpgppclnhvaydmlsvddmmrgahrlkvkgidigwgpgrhtagnntfsyf
vtpggfvteytseleevdfdthqykvhvpapmvmdqwgigtggpqtlphphanpglfqta
eaeghhhhhh

    Sequence, based on observed residues (ATOM records):
    >3b59A (A:)
lsrvteiryvgygvkdfdaekafyadvwglepvgedannawfkaqgadehhvvqlrrade
nridvialaadsrsdvdalrasveaagckvasepavlatpgggygfrffspdgllfevss
dvakgakrdlarwegvpvkishivlhspnhqdmvkfftdvlgfkvsdwlgdfmcflrcns
ahhriailpgppclnhvaydmlsvddmmrgahrlkvkgidigwgpgrhtagnntfsyfvt
pggfvteytseleevdfdthqykvhvpapmvmdqwgigtggpqtlphphanpglfqtaea
e

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3b59B (B:)
mslsrvteiryvgygvkdfdaekafyadvwglepvgedannawfkaqgadehhvvqlrra
denridvialaadsrsdvdalrasveaagckvasepavlatpgggygfrffspdgllfev
ssdvakgakrdlarwegvpvkishivlhspnhqdmvkfftdvlgfkvsdwlgdfmcflrc
nsahhriailpgppclnhvaydmlsvddmmrgahrlkvkgidigwgpgrhtagnntfsyf
vtpggfvteytseleevdfdthqykvhvpapmvmdqwgigtggpqtlphphanpglfqta
eaeghhhhhh

    Sequence, based on observed residues (ATOM records):
    >3b59B (B:)
lsrvteiryvgygvkdfdaekafyadvwglepvgedannawfkaqgadehhvvqlrrade
nridvialaadsrsdvdalrasveaagckvasepavlatpgggygfrffspdgllfevss
dvakgakrdlarwegvpvkishivlhspnhqdmvkfftdvlgfkvsdwlgdfmcflrcns
ahhriailpgppclnhvaydmlsvddmmrgahrlkvkgidigwgpgrhtagnntfsyfvt
pggfvteytseleevdfdthqykvhvpapmvmdqwgigtggpqtlphphanpglfqtaea
e

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3b59C (C:)
mslsrvteiryvgygvkdfdaekafyadvwglepvgedannawfkaqgadehhvvqlrra
denridvialaadsrsdvdalrasveaagckvasepavlatpgggygfrffspdgllfev
ssdvakgakrdlarwegvpvkishivlhspnhqdmvkfftdvlgfkvsdwlgdfmcflrc
nsahhriailpgppclnhvaydmlsvddmmrgahrlkvkgidigwgpgrhtagnntfsyf
vtpggfvteytseleevdfdthqykvhvpapmvmdqwgigtggpqtlphphanpglfqta
eaeghhhhhh

    Sequence, based on observed residues (ATOM records):
    >3b59C (C:)
lsrvteiryvgygvkdfdaekafyadvwglepvgedannawfkaqgadehhvvqlrrade
nridvialaadsrsdvdalrasveaagckvasepavlatpgggygfrffspdgllfevss
dvakgakrdlarwegvpvkishivlhspnhqdmvkfftdvlgfkvsdwlgdfmcflrcns
ahhriailpgppclnhvaydmlsvddmmrgahrlkvkgidigwgpgrhtagnntfsyfvt
pggfvteytseleevdfdthqykvhvpapmvmdqwgigtggpqtlphphanpglfqtaea
e

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3b59D (D:)
mslsrvteiryvgygvkdfdaekafyadvwglepvgedannawfkaqgadehhvvqlrra
denridvialaadsrsdvdalrasveaagckvasepavlatpgggygfrffspdgllfev
ssdvakgakrdlarwegvpvkishivlhspnhqdmvkfftdvlgfkvsdwlgdfmcflrc
nsahhriailpgppclnhvaydmlsvddmmrgahrlkvkgidigwgpgrhtagnntfsyf
vtpggfvteytseleevdfdthqykvhvpapmvmdqwgigtggpqtlphphanpglfqta
eaeghhhhhh

    Sequence, based on observed residues (ATOM records):
    >3b59D (D:)
lsrvteiryvgygvkdfdaekafyadvwglepvgedannawfkaqgadehhvvqlrrade
nridvialaadsrsdvdalrasveaagckvasepavlatpgggygfrffspdgllfevss
dvakgakrdlarwegvpvkishivlhspnhqdmvkfftdvlgfkvsdwlgdfmcflrcns
ahhriailpgppclnhvaydmlsvddmmrgahrlkvkgidigwgpgrhtagnntfsyfvt
pggfvteytseleevdfdthqykvhvpapmvmdqwgigtggpqtlphphanpglfqtaea
e

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3b59E (E:)
mslsrvteiryvgygvkdfdaekafyadvwglepvgedannawfkaqgadehhvvqlrra
denridvialaadsrsdvdalrasveaagckvasepavlatpgggygfrffspdgllfev
ssdvakgakrdlarwegvpvkishivlhspnhqdmvkfftdvlgfkvsdwlgdfmcflrc
nsahhriailpgppclnhvaydmlsvddmmrgahrlkvkgidigwgpgrhtagnntfsyf
vtpggfvteytseleevdfdthqykvhvpapmvmdqwgigtggpqtlphphanpglfqta
eaeghhhhhh

    Sequence, based on observed residues (ATOM records):
    >3b59E (E:)
lsrvteiryvgygvkdfdaekafyadvwglepvgedannawfkaqgadehhvvqlrrade
nridvialaadsrsdvdalrasveaagckvasepavlatpgggygfrffspdgllfevss
dvakgakrdlarwegvpvkishivlhspnhqdmvkfftdvlgfkvsdwlgdfmcflrcns
ahhriailpgppclnhvaydmlsvddmmrgahrlkvkgidigwgpgrhtagnntfsyfvt
pggfvteytseleevdfdthqykvhvpapmvmdqwgigtggpqtlphphanpglfqtaea
e

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3b59F (F:)
mslsrvteiryvgygvkdfdaekafyadvwglepvgedannawfkaqgadehhvvqlrra
denridvialaadsrsdvdalrasveaagckvasepavlatpgggygfrffspdgllfev
ssdvakgakrdlarwegvpvkishivlhspnhqdmvkfftdvlgfkvsdwlgdfmcflrc
nsahhriailpgppclnhvaydmlsvddmmrgahrlkvkgidigwgpgrhtagnntfsyf
vtpggfvteytseleevdfdthqykvhvpapmvmdqwgigtggpqtlphphanpglfqta
eaeghhhhhh

    Sequence, based on observed residues (ATOM records):
    >3b59F (F:)
lsrvteiryvgygvkdfdaekafyadvwglepvgedannawfkaqgadehhvvqlrrade
nridvialaadsrsdvdalrasveaagckvasepavlatpgggygfrffspdgllfevss
dvakgakrdlarwegvpvkishivlhspnhqdmvkfftdvlgfkvsdwlgdfmcflrcns
ahhriailpgppclnhvaydmlsvddmmrgahrlkvkgidigwgpgrhtagnntfsyfvt
pggfvteytseleevdfdthqykvhvpapmvmdqwgigtggpqtlphphanpglfqtaea
e