PDB entry 3b4s

View 3b4s on RCSB PDB site
Description: Crystal structure of a LuxT domain from Vibrio parahaemolyticus RIMD 2210633
Deposited on 2007-10-24, released 2007-11-06
The last revision was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.192
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Protein LuxT
    Species: Vibrio parahaemolyticus [TaxId:223926]
    Gene: VPA0420
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q87J33 (3-93)
      • expression tag (2)
  • Chain 'B':
    Compound: Protein LuxT
    Species: Vibrio parahaemolyticus [TaxId:223926]
    Gene: VPA0420
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Protein LuxT
    Species: Vibrio parahaemolyticus [TaxId:223926]
    Gene: VPA0420
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q87J33 (3-93)
      • expression tag (2)
  • Chain 'D':
    Compound: Protein LuxT
    Species: Vibrio parahaemolyticus [TaxId:223926]
    Gene: VPA0420
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Protein LuxT
    Species: Vibrio parahaemolyticus [TaxId:223926]
    Gene: VPA0420
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Protein LuxT
    Species: Vibrio parahaemolyticus [TaxId:223926]
    Gene: VPA0420
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Protein LuxT
    Species: Vibrio parahaemolyticus [TaxId:223926]
    Gene: VPA0420
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Protein LuxT
    Species: Vibrio parahaemolyticus [TaxId:223926]
    Gene: VPA0420
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3b4sA (A:)
snadgrifkmfiehlefekgldafsqswikaledseflailrllfhhivtsesahefaan
gidrlykmvesqfgsggdkelewligrsliqmsk

    Sequence, based on observed residues (ATOM records):
    >3b4sA (A:)
adgrifkmfiehlefekgldafsqswikaledseflailrllfhhivtsesahefaangi
drlykmvesqfgsggdkelewligrsliqmsk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3b4sB (B:)
snadgrifkmfiehlefekgldafsqswikaledseflailrllfhhivtsesahefaan
gidrlykmvesqfgsggdkelewligrsliqmsk

    Sequence, based on observed residues (ATOM records):
    >3b4sB (B:)
dgrifkmfiehlefekgldafsqswikaledseflailrllfhhivtsesahefaangid
rlykmvesqfgsggdkelewligrsliqmsk

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3b4sC (C:)
snadgrifkmfiehlefekgldafsqswikaledseflailrllfhhivtsesahefaan
gidrlykmvesqfgsggdkelewligrsliqmsk

    Sequence, based on observed residues (ATOM records):
    >3b4sC (C:)
adgrifkmfiehlefekgldafsqswikaledseflailrllfhhivtsesahefaangi
drlykmvesqfgsggdkelewligrsliqmsk

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3b4sD (D:)
snadgrifkmfiehlefekgldafsqswikaledseflailrllfhhivtsesahefaan
gidrlykmvesqfgsggdkelewligrsliqmsk

    Sequence, based on observed residues (ATOM records):
    >3b4sD (D:)
grifkmfiehlefekgldafsqswikaledseflailrllfhhivtsesahefaangidr
lykmvesqfgsggdkelewligrsliqmsk

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3b4sE (E:)
snadgrifkmfiehlefekgldafsqswikaledseflailrllfhhivtsesahefaan
gidrlykmvesqfgsggdkelewligrsliqmsk

    Sequence, based on observed residues (ATOM records):
    >3b4sE (E:)
dgrifkmfiehlefekgldafsqswikaledseflailrllfhhivtsesahefaangid
rlykmvesqfgsggdkelewligrsliqmsk

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3b4sF (F:)
snadgrifkmfiehlefekgldafsqswikaledseflailrllfhhivtsesahefaan
gidrlykmvesqfgsggdkelewligrsliqmsk

    Sequence, based on observed residues (ATOM records):
    >3b4sF (F:)
grifkmfiehlefekgldafsqswikaledseflailrllfhhivtsesahefaangidr
lykmvesqfgsggdkelewligrsliqmsk

  • Chain 'G':
    Sequence, based on SEQRES records:
    >3b4sG (G:)
snadgrifkmfiehlefekgldafsqswikaledseflailrllfhhivtsesahefaan
gidrlykmvesqfgsggdkelewligrsliqmsk

    Sequence, based on observed residues (ATOM records):
    >3b4sG (G:)
dgrifkmfiehlefekgldafsqswikaledseflailrllfhhivtsesahefaangid
rlykmvesqfgsggdkelewligrsliqmsk

  • Chain 'H':
    Sequence, based on SEQRES records:
    >3b4sH (H:)
snadgrifkmfiehlefekgldafsqswikaledseflailrllfhhivtsesahefaan
gidrlykmvesqfgsggdkelewligrsliqmsk

    Sequence, based on observed residues (ATOM records):
    >3b4sH (H:)
grifkmfiehlefekgldafsqswikaledseflailrllfhhivtsesahefaangidr
lykmvesqfgsggdkelewligrsliqmsk