PDB entry 3b2d

View 3b2d on RCSB PDB site
Description: crystal structure of human rp105/md-1 complex
Deposited on 2011-07-29, released 2011-11-09
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: CD180 antigen
    Species: Homo sapiens [TaxId:9606]
    Gene: CD180, LY64, RP105
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: CD180 antigen
    Species: Homo sapiens [TaxId:9606]
    Gene: CD180, LY64, RP105
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Lymphocyte antigen 86
    Species: Homo sapiens [TaxId:9606]
    Gene: Ly86, Md1
    Database cross-references and differences (RAF-indexed):
    • Uniprot O95711 (Start-141)
      • expression tag (142-143)
  • Chain 'D':
    Compound: Lymphocyte antigen 86
    Species: Homo sapiens [TaxId:9606]
    Gene: Ly86, Md1
    Database cross-references and differences (RAF-indexed):
    • Uniprot O95711 (Start-141)
      • expression tag (142-143)
  • Heterogens: NAG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3b2dA (A:)
wdqmciekeanktyncenlglseipdtlpntteflefsfnflptihnrtfsrlmnltfld
ltrcqinwihedtfqshhqlstlvltgnplifmaetslngpkslkhlfliqtgisnlefi
pvhnlenleslylgsnhissikfpkdfparnlkvldfqnnaihyisredmrsleqainls
lnfngnnvkgielgafdstifqslnfggtpnlsvifnglqnsttqslwlgtfediddedi
ssamlkglcemsveslnlqehrfsdissttfqcftqlqeldltathlkglpsgmkglnll
kklvlsvnhfdqlcqisaanfpslthlyirgnvkklhlgvgcleklgnlqtldlshndie
asdccslqlknlshlqtlnlshneplglqsqafkecpqlelldlaftrlhinapqspfqn
lhflqvlnltycfldtsnqhllaglpvlrhlnlkgnhfqdgtitktnllqtvgslevlil
sscgllsidqqafhslgkmshvdlshnsltcdsidslshlkgiylnlaansiniisprll
pilsqqstinlshnpldctcsnihfltwykenlhklegseettcanppslrgvklsdvkl
scg

    Sequence, based on observed residues (ATOM records):
    >3b2dA (A:)
qmciekeanktyncenlglseipdtlpntteflefsfnflptihnrtfsrlmnltfldlt
rcqinwihedtfqshhqlstlvltgnplifmaetslngpkslkhlfliqtgisnlefipv
hnlenleslylgsnhissikfpkdfparnlkvldfqnnaihyisredmrsleqainlsln
fngnnvkgielgafdstifqslnfggtpnlsvifnglqnsttqslwlgtfediddediss
amlkglcemsveslnlqehrfsdissttfqcftqlqeldltathlkglpsgmkglnllkk
lvlsvnhfdqlcqisaanfpslthlyirgnvkklhlgvgcleklgnlqtldlshndieas
dccslqlknlshlqtlnlshneplglqsqafkecpqlelldlaftrlhinapqspfqnlh
flqvlnltycfldtsnqhllaglpvlrhlnlkgnhfqdgtitktnllqtvgslevlilss
cgllsidqqafhslgkmshvdlshnsltcdsidslshlkgiylnlaansiniisprllpi
lsqqstinlshnpldctcsnihfltwykenlhklegseettcanppslrgvklsdvklsc
g

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3b2dB (B:)
wdqmciekeanktyncenlglseipdtlpntteflefsfnflptihnrtfsrlmnltfld
ltrcqinwihedtfqshhqlstlvltgnplifmaetslngpkslkhlfliqtgisnlefi
pvhnlenleslylgsnhissikfpkdfparnlkvldfqnnaihyisredmrsleqainls
lnfngnnvkgielgafdstifqslnfggtpnlsvifnglqnsttqslwlgtfediddedi
ssamlkglcemsveslnlqehrfsdissttfqcftqlqeldltathlkglpsgmkglnll
kklvlsvnhfdqlcqisaanfpslthlyirgnvkklhlgvgcleklgnlqtldlshndie
asdccslqlknlshlqtlnlshneplglqsqafkecpqlelldlaftrlhinapqspfqn
lhflqvlnltycfldtsnqhllaglpvlrhlnlkgnhfqdgtitktnllqtvgslevlil
sscgllsidqqafhslgkmshvdlshnsltcdsidslshlkgiylnlaansiniisprll
pilsqqstinlshnpldctcsnihfltwykenlhklegseettcanppslrgvklsdvkl
scg

    Sequence, based on observed residues (ATOM records):
    >3b2dB (B:)
qmciekeanktyncenlglseipdtlpntteflefsfnflptihnrtfsrlmnltfldlt
rcqinwihedtfqshhqlstlvltgnplifmaetslngpkslkhlfliqtgisnlefipv
hnlenleslylgsnhissikfpkdfparnlkvldfqnnaihyisredmrsleqainlsln
fngnnvkgielgafdstifqslnfggtpnlsvifnglqnsttqslwlgtfediddediss
amlkglcemsveslnlqehrfsdissttfqcftqlqeldltathlkglpsgmkglnllkk
lvlsvnhfdqlcqisaanfpslthlyirgnvkklhlgvgcleklgnlqtldlshndieas
dccslqlknlshlqtlnlshneplglqsqafkecpqlelldlaftrlhinapqspfqnlh
flqvlnltycfldtsnqhllaglpvlrhlnlkgnhfqdgtitktnllqtvgslevlilss
cgllsidqqafhslgkmshvdlshnsltcdsidslshlkgiylnlaansiniisprllpi
lsqqstinlshnpldctcsnihfltwykenlhklegseettcanppslrgvklsdvklsc
g

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3b2dC (C:)
ggggkawpthvvcsdsglevlyqscdplqdfgfsvekcskqlksninirfgiilredike
lfldlalmsqgssvlnfsypiceaalpkfsfcgrrkgeqiyyagpvnnpeftipqgeyqv
llelytekrstvacanatimcsef

    Sequence, based on observed residues (ATOM records):
    >3b2dC (C:)
awpthvvcsdsglevlyqscdplqdfgfsvekcskqlksninirfgiilredikelfldl
almsqgssvlnfsypiceaalpkfsfcgrrkgeqiyyagpvnnpeftipqgeyqvllely
tekrstvacanatimcsef

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3b2dD (D:)
ggggkawpthvvcsdsglevlyqscdplqdfgfsvekcskqlksninirfgiilredike
lfldlalmsqgssvlnfsypiceaalpkfsfcgrrkgeqiyyagpvnnpeftipqgeyqv
llelytekrstvacanatimcsef

    Sequence, based on observed residues (ATOM records):
    >3b2dD (D:)
awpthvvcsdsglevlyqscdplqdfgfsvekcskqlksninirfgiilredikelfldl
almsqgssvlnfsypiceaalpkfsfcgrrkgeqiyyagpvnnpeftipqgeyqvllely
tekrstvacanatimcsef