PDB entry 3b1d

View 3b1d on RCSB PDB site
Description: Crystal structure of betaC-S lyase from Streptococcus anginosus in complex with L-serine: External aldimine form
Class: lyase
Keywords: lyase
Deposited on 2011-06-29, released 2012-06-27
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-10-11, with a file datestamp of 2017-10-06.
Experiment type: XRAY
Resolution: 1.66 Å
R-factor: N/A
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: BetaC-S lyase
    Species: Streptococcus anginosus [TaxId:1328]
    Gene: lcd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3b1da_
  • Chain 'B':
    Compound: BetaC-S lyase
    Species: Streptococcus anginosus [TaxId:1328]
    Gene: lcd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3b1db_
  • Chain 'C':
    Compound: BetaC-S lyase
    Species: Streptococcus anginosus [TaxId:1328]
    Gene: lcd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3b1dc_
  • Chain 'D':
    Compound: BetaC-S lyase
    Species: Streptococcus anginosus [TaxId:1328]
    Gene: lcd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3b1dd_
  • Heterogens: PLP, PLS, EPE, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3b1dA (A:)
    gplgsskynfqtapnrlshhtykwketetdpqllpawiadmdfevmpevkqaihdyaeql
    vygytyasdellqavldweksehqysfdkedivfvegvvpaisiaiqaftkegeavlins
    pvyppfarsvrlnnrklvsnslkeenglfqidfeqlendivendvklyllcnphnpggrv
    werevleqighlcqkhhvilvsdeihqdltlfghehvsfntvspdfkdfalvlssatktf
    niagtknsyaiienptlcaqfkhqqlvnnhhevsslgyiatetayrygkpwlvalkavle
    eniqfaveyfaqeaprlkvmkpqgtyliwldfsdygltddalftllhdqakvilnrgsdy
    gsegelharlniaapkslveeickrivcclpk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3b1dA (A:)
    skynfqtapnrlshhtykwketetdpqllpawiadmdfevmpevkqaihdyaeqlvygyt
    yasdellqavldweksehqysfdkedivfvegvvpaisiaiqaftkegeavlinspvypp
    farsvrlnnrklvsnslkeenglfqidfeqlendivendvklyllcnphnpggrvwerev
    leqighlcqkhhvilvsdeihqdltlfghehvsfntvspdfkdfalvlssatktfniagt
    knsyaiienptlcaqfkhqqlvnnhhevsslgyiatetayrygkpwlvalkavleeniqf
    aveyfaqeaprlkvmkpqgtyliwldfsdygltddalftllhdqakvilnrgsdygsege
    lharlniaapkslveeickrivcclpk
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3b1dB (B:)
    gplgsskynfqtapnrlshhtykwketetdpqllpawiadmdfevmpevkqaihdyaeql
    vygytyasdellqavldweksehqysfdkedivfvegvvpaisiaiqaftkegeavlins
    pvyppfarsvrlnnrklvsnslkeenglfqidfeqlendivendvklyllcnphnpggrv
    werevleqighlcqkhhvilvsdeihqdltlfghehvsfntvspdfkdfalvlssatktf
    niagtknsyaiienptlcaqfkhqqlvnnhhevsslgyiatetayrygkpwlvalkavle
    eniqfaveyfaqeaprlkvmkpqgtyliwldfsdygltddalftllhdqakvilnrgsdy
    gsegelharlniaapkslveeickrivcclpk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3b1dB (B:)
    skynfqtapnrlshhtykwketetdpqllpawiadmdfevmpevkqaihdyaeqlvygyt
    yasdellqavldweksehqysfdkedivfvegvvpaisiaiqaftkegeavlinspvypp
    farsvrlnnrklvsnslkeenglfqidfeqlendivendvklyllcnphnpggrvwerev
    leqighlcqkhhvilvsdeihqdltlfghehvsfntvspdfkdfalvlssatktfniagt
    knsyaiienptlcaqfkhqqlvnnhhevsslgyiatetayrygkpwlvalkavleeniqf
    aveyfaqeaprlkvmkpqgtyliwldfsdygltddalftllhdqakvilnrgsdygsege
    lharlniaapkslveeickrivcclpk
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3b1dC (C:)
    gplgsskynfqtapnrlshhtykwketetdpqllpawiadmdfevmpevkqaihdyaeql
    vygytyasdellqavldweksehqysfdkedivfvegvvpaisiaiqaftkegeavlins
    pvyppfarsvrlnnrklvsnslkeenglfqidfeqlendivendvklyllcnphnpggrv
    werevleqighlcqkhhvilvsdeihqdltlfghehvsfntvspdfkdfalvlssatktf
    niagtknsyaiienptlcaqfkhqqlvnnhhevsslgyiatetayrygkpwlvalkavle
    eniqfaveyfaqeaprlkvmkpqgtyliwldfsdygltddalftllhdqakvilnrgsdy
    gsegelharlniaapkslveeickrivcclpk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3b1dC (C:)
    kynfqtapnrlshhtykwketetdpqllpawiadmdfevmpevkqaihdyaeqlvygyty
    asdellqavldweksehqysfdkedivfvegvvpaisiaiqaftkegeavlinspvyppf
    arsvrlnnrklvsnslkeenglfqidfeqlendivendvklyllcnphnpggrvwerevl
    eqighlcqkhhvilvsdeihqdltlfghehvsfntvspdfkdfalvlssatktfniagtk
    nsyaiienptlcaqfkhqqlvnnhhevsslgyiatetayrygkpwlvalkavleeniqfa
    veyfaqeaprlkvmkpqgtyliwldfsdygltddalftllhdqakvilnrgsdygsegel
    harlniaapkslveeickrivcclpk
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3b1dD (D:)
    gplgsskynfqtapnrlshhtykwketetdpqllpawiadmdfevmpevkqaihdyaeql
    vygytyasdellqavldweksehqysfdkedivfvegvvpaisiaiqaftkegeavlins
    pvyppfarsvrlnnrklvsnslkeenglfqidfeqlendivendvklyllcnphnpggrv
    werevleqighlcqkhhvilvsdeihqdltlfghehvsfntvspdfkdfalvlssatktf
    niagtknsyaiienptlcaqfkhqqlvnnhhevsslgyiatetayrygkpwlvalkavle
    eniqfaveyfaqeaprlkvmkpqgtyliwldfsdygltddalftllhdqakvilnrgsdy
    gsegelharlniaapkslveeickrivcclpk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3b1dD (D:)
    kynfqtapnrlshhtykwketetdpqllpawiadmdfevmpevkqaihdyaeqlvygyty
    asdellqavldweksehqysfdkedivfvegvvpaisiaiqaftkegeavlinspvyppf
    arsvrlnnrklvsnslkeenglfqidfeqlendivendvklyllcnphnpggrvwerevl
    eqighlcqkhhvilvsdeihqdltlfghehvsfntvspdfkdfalvlssatktfniagtk
    nsyaiienptlcaqfkhqqlvnnhhevsslgyiatetayrygkpwlvalkavleeniqfa
    veyfaqeaprlkvmkpqgtyliwldfsdygltddalftllhdqakvilnrgsdygsegel
    harlniaapkslveeickrivcclpk