PDB entry 3b06

View 3b06 on RCSB PDB site
Description: Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase in complex with reduced FMN and DMAPP.
Deposited on 2011-06-03, released 2011-11-02
The last revision was dated 2012-05-23, with a file datestamp of 2012-05-18.
Experiment type: XRAY
Resolution: 2.29 Å
R-factor: 0.206
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Isopentenyl-diphosphate delta-isomerase
    Species: Sulfolobus shibatae [TaxId:2286]
    Gene: fni, idi
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Isopentenyl-diphosphate delta-isomerase
    Species: Sulfolobus shibatae [TaxId:2286]
    Gene: fni, idi
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Isopentenyl-diphosphate delta-isomerase
    Species: Sulfolobus shibatae [TaxId:2286]
    Gene: fni, idi
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Isopentenyl-diphosphate delta-isomerase
    Species: Sulfolobus shibatae [TaxId:2286]
    Gene: fni, idi
    Database cross-references and differences (RAF-indexed):
  • Heterogens: FNR, DMA, MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3b06A (A:)
mpdivnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisv
pvmvtgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvapti
piianlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklr
diskelsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwk
aesaknfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvl
ksaiegkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsi
yekvrkre

    Sequence, based on observed residues (ATOM records):
    >3b06A (A:)
divnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisvpv
mvtgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvaptipi
ianlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklrdi
skelsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwkae
saknfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvlks
aiegkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsiye
kvrk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3b06B (B:)
mpdivnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisv
pvmvtgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvapti
piianlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklr
diskelsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwk
aesaknfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvl
ksaiegkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsi
yekvrkre

    Sequence, based on observed residues (ATOM records):
    >3b06B (B:)
divnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisvpv
mvtgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvaptipi
ianlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklrdi
skelsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwkae
saknfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvlks
aiegkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsiye
kvrk

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3b06C (C:)
mpdivnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisv
pvmvtgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvapti
piianlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklr
diskelsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwk
aesaknfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvl
ksaiegkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsi
yekvrkre

    Sequence, based on observed residues (ATOM records):
    >3b06C (C:)
divnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisvpv
mvtgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvaptipi
ianlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklrdi
skelsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwkae
saknfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvlks
aiegkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsiye
kvrk

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3b06D (D:)
mpdivnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisv
pvmvtgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvapti
piianlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklr
diskelsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwk
aesaknfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvl
ksaiegkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsi
yekvrkre

    Sequence, based on observed residues (ATOM records):
    >3b06D (D:)
divnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisvpv
mvtgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvaptipi
ianlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklrdi
skelsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwkae
saknfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvlks
aiegkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsiye
kvrk