PDB entry 3b03

View 3b03 on RCSB PDB site
Description: Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase in complex with vIPP.
Deposited on 2011-06-03, released 2011-11-02
The last revision was dated 2012-05-23, with a file datestamp of 2012-05-18.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.203
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Isopentenyl-diphosphate delta-isomerase
    Species: Sulfolobus shibatae [TaxId:2286]
    Gene: fni, idi
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Isopentenyl-diphosphate delta-isomerase
    Species: Sulfolobus shibatae [TaxId:2286]
    Gene: fni, idi
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Isopentenyl-diphosphate delta-isomerase
    Species: Sulfolobus shibatae [TaxId:2286]
    Gene: fni, idi
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Isopentenyl-diphosphate delta-isomerase
    Species: Sulfolobus shibatae [TaxId:2286]
    Gene: fni, idi
    Database cross-references and differences (RAF-indexed):
  • Heterogens: VNR, MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3b03A (A:)
mpdivnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisv
pvmvtgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvapti
piianlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklr
diskelsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwk
aesaknfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvl
ksaiegkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsi
yekvrkre

    Sequence, based on observed residues (ATOM records):
    >3b03A (A:)
vnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisvpvmv
tgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvaptipiia
nlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklrdisk
elsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwkaesa
knfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvlksai
egkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsiyekv
rkr

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3b03B (B:)
mpdivnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisv
pvmvtgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvapti
piianlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklr
diskelsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwk
aesaknfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvl
ksaiegkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsi
yekvrkre

    Sequence, based on observed residues (ATOM records):
    >3b03B (B:)
ivnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisvpvm
vtgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvaptipii
anlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklrdis
kelsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwkaes
aknfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvlksa
iegkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsiyek
vrkr

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3b03C (C:)
mpdivnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisv
pvmvtgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvapti
piianlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklr
diskelsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwk
aesaknfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvl
ksaiegkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsi
yekvrkre

    Sequence, based on observed residues (ATOM records):
    >3b03C (C:)
ivnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisvpvm
vtgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvaptipii
anlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklrdis
kelsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwkaes
aknfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvlksa
iegkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsiyek
vrkr

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3b03D (D:)
mpdivnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisv
pvmvtgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvapti
piianlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklr
diskelsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwk
aesaknfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvl
ksaiegkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsi
yekvrkre

    Sequence, based on observed residues (ATOM records):
    >3b03D (D:)
ivnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisvpvm
vtgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvaptipii
anlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklrdis
kelsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwkaes
aknfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvlksa
iegkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsiyek
vrkr