PDB entry 3aym

View 3aym on RCSB PDB site
Description: crystal structure of the batho intermediate of squid rhodopsin
Deposited on 2011-05-09, released 2011-08-17
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: rhodopsin
    Species: Todarodes pacificus [TaxId:6637]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: rhodopsin
    Species: Todarodes pacificus [TaxId:6637]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: PLM, BOG, RET, SO4, PC1, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3aymA (A:)
mgrdlrdnetwwynpsivvhphwrefdqvpdavyyslgifigicgiigcggngiviylft
ktkslqtpanmfiinlafsdftfslvngfplmtiscflkkwifgfaackvygfiggifgf
msimtmamisidrynvigrpmaaskkmshrrafimiifvwlwsvlwaigpifgwgaytle
gvlcncsfdyisrdsttrsnilcmfilgffgpiliiffcyfnivmsvsnhekemaamakr
lnakelrkaqaganaemrlakisivivsqfllswspyavvallaqfgplewvtpyaaqlp
vmfakasaihnpmiysvshpkfreaisqtfpwvltccqfddketeddkdaeteipagess
daapsadaaqmkemmammqkmqqqqaayppqgyapppqgyppqgyppqgyppqgyppqgy
ppppqgappqgappaappqgvdnqayqa

    Sequence, based on observed residues (ATOM records):
    >3aymA (A:)
etwwynpsivvhphwrefdqvpdavyyslgifigicgiigcggngiviylftktkslqtp
anmfiinlafsdftfslvngfplmtiscflkkwifgfaackvygfiggifgfmsimtmam
isidrynvigrpmaaskkmshrrafimiifvwlwsvlwaigpifgwgaytlegvlcncsf
dyisrdsttrsnilcmfilgffgpiliiffcyfnivmsvsnhekemaamakrlnakelrk
aqaganaemrlakisivivsqfllswspyavvallaqfgplewvtpyaaqlpvmfakasa
ihnpmiysvshpkfreaisqtfpwvltccqfddketeddkdaeteipage

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3aymB (B:)
mgrdlrdnetwwynpsivvhphwrefdqvpdavyyslgifigicgiigcggngiviylft
ktkslqtpanmfiinlafsdftfslvngfplmtiscflkkwifgfaackvygfiggifgf
msimtmamisidrynvigrpmaaskkmshrrafimiifvwlwsvlwaigpifgwgaytle
gvlcncsfdyisrdsttrsnilcmfilgffgpiliiffcyfnivmsvsnhekemaamakr
lnakelrkaqaganaemrlakisivivsqfllswspyavvallaqfgplewvtpyaaqlp
vmfakasaihnpmiysvshpkfreaisqtfpwvltccqfddketeddkdaeteipagess
daapsadaaqmkemmammqkmqqqqaayppqgyapppqgyppqgyppqgyppqgyppqgy
ppppqgappqgappaappqgvdnqayqa

    Sequence, based on observed residues (ATOM records):
    >3aymB (B:)
etwwynpsivvhphwrefdqvpdavyyslgifigicgiigcggngiviylftktkslqtp
anmfiinlafsdftfslvngfplmtiscflkkwifgfaackvygfiggifgfmsimtmam
isidrynvigrpmaaskkmshrrafimiifvwlwsvlwaigpifgwgaytlegvlcncsf
dyisrdsttrsnilcmfilgffgpiliiffcyfnivmsvsnhekemaamakrlnakelrk
aqaganaemrlakisivivsqfllswspyavvallaqfgplewvtpyaaqlpvmfakasa
ihnpmiysvshpkfreaisqtfpwvltccqfddketeddkdaeteip