PDB entry 3ast

View 3ast on RCSB PDB site
Description: Crystal structure of P domain Q389N mutant from Norovirus Funabashi258 stain in the complex with Lewis-b
Class: viral protein
Keywords: protein-sugar complex, Histo-blood group antigen, capsid protein, Lectin-like protein, VIRAL PROTEIN
Deposited on 2010-12-17, released 2012-01-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-09.
Experiment type: XRAY
Resolution: 1.4 Å
R-factor: N/A
AEROSPACI score: 0.61 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: capsid protein
    Species: Norwalk-like virus [TaxId:95340]
    Gene: capsid, ORF2
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8JW44
      • engineered mutation (173)
    Domains in SCOPe 2.08: d3asta_
  • Chain 'B':
    Compound: capsid protein
    Species: Norwalk-like virus [TaxId:95340]
    Gene: capsid, ORF2
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8JW44
      • engineered mutation (173)
    Domains in SCOPe 2.08: d3astb_
  • Heterogens: NA, NPO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3astA (A:)
gplgsvpptieqktraftvpniplqtlsnsrfpsliqgmilspdasqvvqfqngrclidg
qllgttpatsgqlfrvrgkinqgartlnltevdgkpfmafdspapvgfpdfgkcdwhmri
sktpnntssgdpmrsvsvqtnvqgfvphlgsiqfdevfnhptgdyigtiewisnpstppg
tdinlweipdygsslsqaanlappvfppgfgealvyfvsafpgpnnrsapndvpcllpqe
yithfvseqaptmgdaallhyvdpdtnrnlgefklypggyltcvpngvgagpqqlplngv
flfvswvsrfyqlkpvgtastarsrl

    Sequence, based on observed residues (ATOM records): (download) 
    >3astA (A:)
tieqktraftvpniplqtlsnsrfpsliqgmilspdasqvvqfqngrclidgqllgttpa
tsgqlfrvrgkinqgartlnltevdgkpfmafdspapvgfpdfgkcdwhmrisktpnnts
sgdpmrsvsvqtnvqgfvphlgsiqfdevfnhptgdyigtiewisnpstppgtdinlwei
pdygsslsqaanlappvfppgfgealvyfvsafpgpnnrsapndvpcllpqeyithfvse
qaptmgdaallhyvdpdtnrnlgefklypggyltcvpngvgagpqqlplngvflfvswvs
rfyqlkpvgta

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3astB (B:)
gplgsvpptieqktraftvpniplqtlsnsrfpsliqgmilspdasqvvqfqngrclidg
qllgttpatsgqlfrvrgkinqgartlnltevdgkpfmafdspapvgfpdfgkcdwhmri
sktpnntssgdpmrsvsvqtnvqgfvphlgsiqfdevfnhptgdyigtiewisnpstppg
tdinlweipdygsslsqaanlappvfppgfgealvyfvsafpgpnnrsapndvpcllpqe
yithfvseqaptmgdaallhyvdpdtnrnlgefklypggyltcvpngvgagpqqlplngv
flfvswvsrfyqlkpvgtastarsrl

    Sequence, based on observed residues (ATOM records): (download) 
    >3astB (B:)
raftvpniplqtlsnsrfpsliqgmilspdasqvvqfqngrclidgqllgttpatsgqlf
rvrgkinqgartlnltevdgkpfmafdspapvgfpdfgkcdwhmrisktpnntssgdpmr
svsvqtnvqgfvphlgsiqfdevfnhptgdyigtiewisnpstppgtdinlweipdygss
lsqaanlappvfppgfgealvyfvsafpgpnnrsapndvpcllpqeyithfvseqaptmg
daallhyvdpdtnrnlgefklypggyltcvpngvgagpqqlplngvflfvswvsrfyqlk
pv