PDB entry 3ass

View 3ass on RCSB PDB site
Description: Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with Lewis-b
Class: viral protein
Keywords: protein-sugar complex, Histo-blood group antigen, capsid protein, Lectin-like protein, VIRAL PROTEIN
Deposited on 2010-12-17, released 2012-01-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-09.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: capsid protein
    Species: Norwalk-like virus [TaxId:95340]
    Gene: capsid, ORF2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3assa_
  • Chain 'B':
    Compound: capsid protein
    Species: Norwalk-like virus [TaxId:95340]
    Gene: capsid, ORF2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3assb_
  • Heterogens: NA, NPO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3assA (A:)
gplgsvpptieqktraftvpniplqtlsnsrfpsliqgmilspdasqvvqfqngrclidg
qllgttpatsgqlfrvrgkinqgartlnltevdgkpfmafdspapvgfpdfgkcdwhmri
sktpnntssgdpmrsvsvqtnvqgfvphlgsiqfdevfnhptgdyigtiewisqpstppg
tdinlweipdygsslsqaanlappvfppgfgealvyfvsafpgpnnrsapndvpcllpqe
yithfvseqaptmgdaallhyvdpdtnrnlgefklypggyltcvpngvgagpqqlplngv
flfvswvsrfyqlkpvgtastarsrl

    Sequence, based on observed residues (ATOM records): (download) 
    >3assA (A:)
tieqktraftvpniplqtlsnsrfpsliqgmilspdasqvvqfqngrclidgqllgttpa
tsgqlfrvrgkinqgartlnltevdgkpfmafdspapvgfpdfgkcdwhmrisktpnnts
sgdpmrsvsvqtnvqgfvphlgsiqfdevfnhptgdyigtiewisqpstppgtdinlwei
pdygsslsqaanlappvfppgfgealvyfvsafpgpnnrsapndvpcllpqeyithfvse
qaptmgdaallhyvdpdtnrnlgefklypggyltcvpngvgagpqqlplngvflfvswvs
rfyqlkpvgta

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3assB (B:)
gplgsvpptieqktraftvpniplqtlsnsrfpsliqgmilspdasqvvqfqngrclidg
qllgttpatsgqlfrvrgkinqgartlnltevdgkpfmafdspapvgfpdfgkcdwhmri
sktpnntssgdpmrsvsvqtnvqgfvphlgsiqfdevfnhptgdyigtiewisqpstppg
tdinlweipdygsslsqaanlappvfppgfgealvyfvsafpgpnnrsapndvpcllpqe
yithfvseqaptmgdaallhyvdpdtnrnlgefklypggyltcvpngvgagpqqlplngv
flfvswvsrfyqlkpvgtastarsrl

    Sequence, based on observed residues (ATOM records): (download) 
    >3assB (B:)
raftvpniplqtlsnsrfpsliqgmilspdasqvvqfqngrclidgqllgttpatsgqlf
rvrgkinqgartlnltevdgkpfmafdspapvgfpdfgkcdwhmrisktpnntssgdpmr
svsvqtnvqgfvphlgsiqfdevfnhptgdyigtiewisqpstppgtdinlweipdygss
lsqaanlappvfppgfgealvyfvsafpgpnnrsapndvpcllpqeyithfvseqaptmg
daallhyvdpdtnrnlgefklypggyltcvpngvgagpqqlplngvflfvswvsrfyqlk
pv