PDB entry 3arf
View 3arf on RCSB PDB site
Description: Ternary crystal structure of the mouse NKT TCR-CD1d-C20:2
Class: immune system
Keywords: mouse CD1d, mouse NKT TCR, IMMUNE SYSTEM
Deposited on
2010-11-27, released
2011-03-30
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-07-29, with a file datestamp of
2020-07-04.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.21
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Antigen-presenting glycoprotein CD1d1
Species: Mus musculus [TaxId:10090]
Gene: Cd1d1, Cd1.1
Database cross-references and differences (RAF-indexed):
- Uniprot P11609 (Start-278)
- conflict (200)
- expression tag (279-299)
Domains in SCOPe 2.08: d3arfa1, d3arfa2, d3arfa3 - Chain 'B':
Compound: Beta-2-microglobulin
Species: Mus musculus [TaxId:10090]
Gene: B2M
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3arfb_ - Chain 'C':
Compound: NKT Valpha14-Jalpha18,NKT Valpha14-Jalpha18
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 3ARF (0-112)
- PDB 3ARF (113-End)
Domains in SCOPe 2.08: d3arfc1, d3arfc2 - Chain 'D':
Compound: Vbeta8.2,Vbeta8.2
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 3ARF (Start-113)
- PDB 3ARF (114-243)
Domains in SCOPe 2.08: d3arfd1, d3arfd2 - Heterogens: DB3, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3arfA (A:)
seaqqknytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsn
qqweklqhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvaf
qgkyvvrfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagk
sdlekqekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpn
adetwylqatldveageeaglacrvkhsslggqdiilywgslhhildaqkmvwnhrhhhh
hh
Sequence, based on observed residues (ATOM records): (download)
>3arfA (A:)
nytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqwekl
qhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemygnasesflhvafqgkyvvr
fwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlekqe
kpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwyl
qatldveageeaglacrvkhsslggqdiilywgslhhildaqkmvwnhrhhhh
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>3arfB (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3arfC (C:)
tqveqspqslvvrqgensvlqcnysvtpdnhlrwfkqdtgkglvsltvlvdqkdktsngr
ysatldkdakhstlhitatllddtatyicvvgdrgsalgrlhfgagtqlivipdiqnpdp
avyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsn
ksdfacanafnnsiipedtffpspess
Sequence, based on observed residues (ATOM records): (download)
>3arfC (C:)
tqveqspqslvvrqgensvlqcnysvtpdnhlrwfkqdtgkglvsltvlvdqkdktsngr
ysatldkdakhstlhitatllddtatyicvvgdrgsalgrlhfgagtqlivipdiqnpdp
avyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsn
kdfacanafnnsiipedtffpsp
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3arfD (D:)
eaavtqsprnkvavtggkvtlscnqtnnhnnmywyrqdtghglrlihysygagstekgdi
pdgykasrpsqenfslilelatpsqtsvyfcasgdaggnyaeqffgpgtrltvledlknv
fppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeq
palndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeaw
grad
Sequence, based on observed residues (ATOM records): (download)
>3arfD (D:)
vtqsprnkvavtggkvtlscnqtnnhnnmywyrqdtghglrlihysygagstekgdipdg
ykasrpsqenfslilelatpsqtsvyfcasgdeqffgpgtrltvledlknvfppevavfe
pseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqpalndsrya
lssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgrad