PDB entry 3ard
View 3ard on RCSB PDB site
Description: Ternary crystal structure of the mouse NKT TCR-CD1d-3'deoxy-alpha-galactosylceramide
Class: immune system
Keywords: mouse CD1d, mouse NKT TCR, IMMUNE SYSTEM
Deposited on
2010-11-27, released
2011-03-30
The last revision prior to the SCOPe 2.06 freeze date was dated
2014-01-29, with a file datestamp of
2014-01-24.
Experiment type: XRAY
Resolution: 3.01 Å
R-factor: 0.217
AEROSPACI score: 0.17
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Antigen-presenting glycoprotein CD1d1
Species: Mus musculus [TaxId:10090]
Gene: Cd1d1, Cd1.1
Database cross-references and differences (RAF-indexed):
- Uniprot P11609 (Start-278)
- see remark 999 (200)
- expression tag (279-299)
- Chain 'B':
Compound: Beta-2-microglobulin
Species: Mus musculus [TaxId:10090]
Gene: B2M
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3ardb_ - Chain 'C':
Compound: NKT Valpha14-Jalpha18
Species: Mus musculus, Homo sapiens [TaxId:10090, 9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3ardc1, d3ardc2 - Chain 'D':
Compound: Vbeta8.2
Species: Mus musculus, Homo sapiens [TaxId:10090, 9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3ardd1, d3ardd2 - Heterogens: 3GH, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>3ardB (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3ardC (C:)
tqveqspqslvvrqgensvlqcnysvtpdnhlrwfkqdtgkglvsltvlvdqkdktsngr
ysatldkdakhstlhitatllddtatyicvvgdrgsalgrlhfgagtqlivipdiqnpdp
avyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsn
ksdfacanafnnsiipedtffpspess
Sequence, based on observed residues (ATOM records): (download)
>3ardC (C:)
tqveqspqslvvrqgensvlqcnysvtpdnhlrwfkqdtgkglvsltvlvdqkdktsngr
ysatldkdakhstlhitatllddtatyicvvgdrgsalgrlhfgagtqlivipdiqnpdp
avyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsn
kfacanafnnsiipedtffpsp
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3ardD (D:)
eaavtqsprnkvavtggkvtlscnqtnnhnnmywyrqdtghglrlihysygagstekgdi
pdgykasrpsqenfslilelatpsqtsvyfcasgdaggnyaeqffgpgtrltvledlknv
fppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeq
palndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeaw
grad
Sequence, based on observed residues (ATOM records): (download)
>3ardD (D:)
avtqsprnkvavtggkvtlscnqtnnhnnmywyrqdtghglrlihysygagstekgdipd
gykasrpsqenfslilelatpsqtsvyfcasgdyaeqffgpgtrltvledlknvfppeva
vfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqpalnds
ryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgrad