PDB entry 3arb

View 3arb on RCSB PDB site
Description: Ternary crystal structure of the NKT TCR-CD1d-alpha-galactosylceramide analogue-OCH
Class: immune system
Keywords: mouse NKT TCR, mouse CD1d, IMMUNE SYSTEM
Deposited on 2010-11-26, released 2011-03-30
The last revision prior to the SCOPe 2.02 freeze date was dated 2011-03-30, with a file datestamp of 2011-03-25.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.216
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: Antigen-presenting glycoprotein CD1d1
  Species: Mus musculus [TaxId:10090]
  Gene: Cd1d1, Cd1.1
  Database cross-references and differences (RAF-indexed):
  • Uniprot P11609 (Start-278)
    • see remark 999 (200)
    • expression tag (279-301)
• Chain 'B':
  Compound: Beta-2-microglobulin
  Species: Mus musculus [TaxId:10090]
  Gene: B2M
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q91XJ8 (Start-98)
  Domains in SCOPe 2.02: d3arbb_
• Chain 'C':
  Compound: NKT Valpha14-Jalpha18
  Species: Mus musculus, Homo sapiens [TaxId:10090, 9606]
  Database cross-references and differences (RAF-indexed):
  • PDB 3ARB (0-End)
• Chain 'D':
  Compound: NKT Vbeta8.2
  Species: Mus musculus, Homo sapiens [TaxId:10090, 9606]
  Database cross-references and differences (RAF-indexed):
  • PDB 3ARB (Start-243)
• Heterogens: PEG, NAG, FEE, D12, HOH

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  Sequence, based on SEQRES records: (download)
  

  >3arbB (B:)
  iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
  sfyilahteftptetdtyacrvkhasmaepktvywdrdm
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >3arbB (B:)
  qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
  fyilahteftptetdtyacrvkhasmaepktvywdrdm
  

  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  No sequence available.