PDB entry 3apy

View 3apy on RCSB PDB site
Description: Properties and crystal structure of methylenetetrahydrofolate reductase from Thermus thermophilus HB8
Class: oxidoreductase
Keywords: tim barrel, oxidoreductase, flavin
Deposited on 2010-10-21, released 2011-09-14
The last revision prior to the SCOPe 2.05 freeze date was dated 2011-09-14, with a file datestamp of 2011-09-09.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.209
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Methylenetetrahydrofolate reductase
    Species: Thermus thermophilus [TaxId:300852]
    Gene: TTHA0327
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3apya_
  • Chain 'B':
    Compound: Methylenetetrahydrofolate reductase
    Species: Thermus thermophilus [TaxId:300852]
    Gene: TTHA0327
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3apyb_
  • Chain 'C':
    Compound: Methylenetetrahydrofolate reductase
    Species: Thermus thermophilus [TaxId:300852]
    Gene: TTHA0327
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3apyc_
  • Chain 'D':
    Compound: Methylenetetrahydrofolate reductase
    Species: Thermus thermophilus [TaxId:300852]
    Gene: TTHA0327
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3apyd_
  • Chain 'E':
    Compound: Methylenetetrahydrofolate reductase
    Species: Thermus thermophilus [TaxId:300852]
    Gene: TTHA0327
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3apye_
  • Chain 'F':
    Compound: Methylenetetrahydrofolate reductase
    Species: Thermus thermophilus [TaxId:300852]
    Gene: TTHA0327
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3apyf_
  • Chain 'G':
    Compound: Methylenetetrahydrofolate reductase
    Species: Thermus thermophilus [TaxId:300852]
    Gene: TTHA0327
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3apyg_
  • Chain 'H':
    Compound: Methylenetetrahydrofolate reductase
    Species: Thermus thermophilus [TaxId:300852]
    Gene: TTHA0327
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3apyh_
  • Heterogens: FAD, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3apyA (A:)
    mkirdllkarrgplfsfeffppkdpegeealfrtleelkafrpafvsitygamgstrers
    vawaqriqslglnplahltvagqsrkevaevlhrfvesgvenllalrgdpprgervfrph
    pegfryaaelvalirerygdrvsvggaaypeghpesesleadlrhfkakveagldfaitq
    lffnnahyfgflerarragigipilpgimpvtsyrqlrrftevcgasipgpllaklerhq
    ddpkavleigvehavrqvaelleagvegvhfytlnkspatrmvlerlglrpasgqpakla
    aalehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3apyA (A:)
    mkirdllkarrgplfsfeffppkdpegeealfrtleelkafrpafvsitygamgstrers
    vawaqriqslglnplahltvagqsrkevaevlhrfvesgvenllalrgdpprgervfrph
    pegfryaaelvalirerygdrvsvggaaypeghpesesleadlrhfkakveagldfaitq
    lffnnahyfgflerarragigipilpgimpvtsyrqlrrftevcgasipgpllaklerhq
    ddpkavleigvehavrqvaelleagvegvhfytlnkspatrmvlerlglrp
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3apyB (B:)
    mkirdllkarrgplfsfeffppkdpegeealfrtleelkafrpafvsitygamgstrers
    vawaqriqslglnplahltvagqsrkevaevlhrfvesgvenllalrgdpprgervfrph
    pegfryaaelvalirerygdrvsvggaaypeghpesesleadlrhfkakveagldfaitq
    lffnnahyfgflerarragigipilpgimpvtsyrqlrrftevcgasipgpllaklerhq
    ddpkavleigvehavrqvaelleagvegvhfytlnkspatrmvlerlglrpasgqpakla
    aalehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3apyB (B:)
    mkirdllkarrgplfsfeffppkdpegeealfrtleelkafrpafvsitygamgstrers
    vawaqriqslglnplahltvagqsrkevaevlhrfvesgvenllalrgdpprgervfrph
    pegfryaaelvalirerygdrvsvggaaypeghpesesleadlrhfkakveagldfaitq
    lffnnahyfgflerarragigipilpgimpvtsyrqlrrftevcgasipgpllaklerhq
    ddpkavleigvehavrqvaelleagvegvhfytlnkspatrmvlerlglrp
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3apyC (C:)
    mkirdllkarrgplfsfeffppkdpegeealfrtleelkafrpafvsitygamgstrers
    vawaqriqslglnplahltvagqsrkevaevlhrfvesgvenllalrgdpprgervfrph
    pegfryaaelvalirerygdrvsvggaaypeghpesesleadlrhfkakveagldfaitq
    lffnnahyfgflerarragigipilpgimpvtsyrqlrrftevcgasipgpllaklerhq
    ddpkavleigvehavrqvaelleagvegvhfytlnkspatrmvlerlglrpasgqpakla
    aalehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3apyC (C:)
    mkirdllkarrgplfsfeffppkdpegeealfrtleelkafrpafvsitygamgstrers
    vawaqriqslglnplahltvagqsrkevaevlhrfvesgvenllalrgdpprgervfrph
    pegfryaaelvalirerygdrvsvggaaypeghpesesleadlrhfkakveagldfaitq
    lffnnahyfgflerarragigipilpgimpvtsyrqlrrftevcgasipgpllaklerhq
    ddpkavleigvehavrqvaelleagvegvhfytlnkspatrmvlerlglrp
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3apyD (D:)
    mkirdllkarrgplfsfeffppkdpegeealfrtleelkafrpafvsitygamgstrers
    vawaqriqslglnplahltvagqsrkevaevlhrfvesgvenllalrgdpprgervfrph
    pegfryaaelvalirerygdrvsvggaaypeghpesesleadlrhfkakveagldfaitq
    lffnnahyfgflerarragigipilpgimpvtsyrqlrrftevcgasipgpllaklerhq
    ddpkavleigvehavrqvaelleagvegvhfytlnkspatrmvlerlglrpasgqpakla
    aalehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3apyD (D:)
    mkirdllkarrgplfsfeffppkdpegeealfrtleelkafrpafvsitygamgstrers
    vawaqriqslglnplahltvagqsrkevaevlhrfvesgvenllalrgdpprgervfrph
    pegfryaaelvalirerygdrvsvggaaypeghpesesleadlrhfkakveagldfaitq
    lffnnahyfgflerarragigipilpgimpvtsyrqlrrftevcgasipgpllaklerhq
    ddpkavleigvehavrqvaelleagvegvhfytlnkspatrmvlerlglrp
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3apyE (E:)
    mkirdllkarrgplfsfeffppkdpegeealfrtleelkafrpafvsitygamgstrers
    vawaqriqslglnplahltvagqsrkevaevlhrfvesgvenllalrgdpprgervfrph
    pegfryaaelvalirerygdrvsvggaaypeghpesesleadlrhfkakveagldfaitq
    lffnnahyfgflerarragigipilpgimpvtsyrqlrrftevcgasipgpllaklerhq
    ddpkavleigvehavrqvaelleagvegvhfytlnkspatrmvlerlglrpasgqpakla
    aalehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3apyE (E:)
    mkirdllkarrgplfsfeffppkdpegeealfrtleelkafrpafvsitygamgstrers
    vawaqriqslglnplahltvagqsrkevaevlhrfvesgvenllalrgdpprgervfrph
    pegfryaaelvalirerygdrvsvggaaypeghpesesleadlrhfkakveagldfaitq
    lffnnahyfgflerarragigipilpgimpvtsyrqlrrftevcgasipgpllaklerhq
    ddpkavleigvehavrqvaelleagvegvhfytlnkspatrmvlerlglrp
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3apyF (F:)
    mkirdllkarrgplfsfeffppkdpegeealfrtleelkafrpafvsitygamgstrers
    vawaqriqslglnplahltvagqsrkevaevlhrfvesgvenllalrgdpprgervfrph
    pegfryaaelvalirerygdrvsvggaaypeghpesesleadlrhfkakveagldfaitq
    lffnnahyfgflerarragigipilpgimpvtsyrqlrrftevcgasipgpllaklerhq
    ddpkavleigvehavrqvaelleagvegvhfytlnkspatrmvlerlglrpasgqpakla
    aalehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3apyF (F:)
    mkirdllkarrgplfsfeffppkdpegeealfrtleelkafrpafvsitygamgstrers
    vawaqriqslglnplahltvagqsrkevaevlhrfvesgvenllalrgdpprgervfrph
    pegfryaaelvalirerygdrvsvggaaypeghpesesleadlrhfkakveagldfaitq
    lffnnahyfgflerarragigipilpgimpvtsyrqlrrftevcgasipgpllaklerhq
    ddpkavleigvehavrqvaelleagvegvhfytlnkspatrmvlerlglrp
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >3apyG (G:)
    mkirdllkarrgplfsfeffppkdpegeealfrtleelkafrpafvsitygamgstrers
    vawaqriqslglnplahltvagqsrkevaevlhrfvesgvenllalrgdpprgervfrph
    pegfryaaelvalirerygdrvsvggaaypeghpesesleadlrhfkakveagldfaitq
    lffnnahyfgflerarragigipilpgimpvtsyrqlrrftevcgasipgpllaklerhq
    ddpkavleigvehavrqvaelleagvegvhfytlnkspatrmvlerlglrpasgqpakla
    aalehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3apyG (G:)
    mkirdllkarrgplfsfeffppkdpegeealfrtleelkafrpafvsitygamgstrers
    vawaqriqslglnplahltvagqsrkevaevlhrfvesgvenllalrgdpprgervfrph
    pegfryaaelvalirerygdrvsvggaaypeghpesesleadlrhfkakveagldfaitq
    lffnnahyfgflerarragigipilpgimpvtsyrqlrrftevcgasipgpllaklerhq
    ddpkavleigvehavrqvaelleagvegvhfytlnkspatrmvlerlglrp
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >3apyH (H:)
    mkirdllkarrgplfsfeffppkdpegeealfrtleelkafrpafvsitygamgstrers
    vawaqriqslglnplahltvagqsrkevaevlhrfvesgvenllalrgdpprgervfrph
    pegfryaaelvalirerygdrvsvggaaypeghpesesleadlrhfkakveagldfaitq
    lffnnahyfgflerarragigipilpgimpvtsyrqlrrftevcgasipgpllaklerhq
    ddpkavleigvehavrqvaelleagvegvhfytlnkspatrmvlerlglrpasgqpakla
    aalehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3apyH (H:)
    mkirdllkarrgplfsfeffppkdpegeealfrtleelkafrpafvsitygamgstrers
    vawaqriqslglnplahltvagqsrkevaevlhrfvesgvenllalrgdpprgervfrph
    pegfryaaelvalirerygdrvsvggaaypeghpesesleadlrhfkakveagldfaitq
    lffnnahyfgflerarragigipilpgimpvtsyrqlrrftevcgasipgpllaklerhq
    ddpkavleigvehavrqvaelleagvegvhfytlnkspatrmvlerlglrp