PDB entry 3ap6

View 3ap6 on RCSB PDB site
Description: Crystal structure of the galectin-8 N-terminal carbohydrate recognition domain in complex with lactose 3'-sulfate
Class: Sugar Binding Protein
Keywords: Beta-Sandwich, Galectin, Carbohydrate/Sugar Binding, Sugar Binding Protein
Deposited on 2010-10-12, released 2011-01-26
The last revision prior to the SCOPe 2.05 freeze date was dated 2014-01-15, with a file datestamp of 2014-01-10.
Experiment type: XRAY
Resolution: 1.58 Å
R-factor: 0.202
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Galectin-8
    Species: Homo sapiens [TaxId:9606]
    Gene: LGALS8
    Database cross-references and differences (RAF-indexed):
    • Uniprot O00214
      • see remark 999 (55)
    Domains in SCOPe 2.05: d3ap6a_
  • Chain 'B':
    Compound: Galectin-8
    Species: Homo sapiens [TaxId:9606]
    Gene: LGALS8
    Database cross-references and differences (RAF-indexed):
    • Uniprot O00214
      • see remark 999 (55)
    Domains in SCOPe 2.05: d3ap6b_
  • Chain 'C':
    Compound: Galectin-8
    Species: Homo sapiens [TaxId:9606]
    Gene: LGALS8
    Database cross-references and differences (RAF-indexed):
    • Uniprot O00214
      • see remark 999 (55)
    Domains in SCOPe 2.05: d3ap6c_
  • Chain 'D':
    Compound: Galectin-8
    Species: Homo sapiens [TaxId:9606]
    Gene: LGALS8
    Database cross-references and differences (RAF-indexed):
    • Uniprot O00214 (Start-153)
      • see remark 999 (55)
    Domains in SCOPe 2.05: d3ap6d_
  • Heterogens: LAT, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3ap6A (A:)
    mmlslnnlqniiynpvipfvgtipdqldpgtlivirghvpsdadrfqvdlqngssvkpra
    dvafhfnprfkragcivcntlinekwgreeitydtpfkreksfeivimvlkdkfqvavng
    khtllyghrigpekidtlgiygkvnihsigfsfs
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ap6A (A:)
    lqniiynpvipfvgtipdqldpgtlivirghvpsdadrfqvdlqngssvkpradvafhfn
    prfkragcivcntlinekwgreeitydtpfkreksfeivimvlkdkfqvavngkhtllyg
    hrigpekidtlgiygkvnihsigfsf
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3ap6B (B:)
    mmlslnnlqniiynpvipfvgtipdqldpgtlivirghvpsdadrfqvdlqngssvkpra
    dvafhfnprfkragcivcntlinekwgreeitydtpfkreksfeivimvlkdkfqvavng
    khtllyghrigpekidtlgiygkvnihsigfsfs
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ap6B (B:)
    qniiynpvipfvgtipdqldpgtlivirghvpsdadrfqvdlqngssvkpradvafhfnp
    rfkragcivcntlinekwgreeitydtpfkreksfeivimvlkdkfqvavngkhtllygh
    rigpekidtlgiygkvnihsigfsf
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3ap6C (C:)
    mmlslnnlqniiynpvipfvgtipdqldpgtlivirghvpsdadrfqvdlqngssvkpra
    dvafhfnprfkragcivcntlinekwgreeitydtpfkreksfeivimvlkdkfqvavng
    khtllyghrigpekidtlgiygkvnihsigfsfs
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ap6C (C:)
    lqniiynpvipfvgtipdqldpgtlivirghvpsdadrfqvdlqngssvkpradvafhfn
    prfkragcivcntlinekwgreeitydtpfkreksfeivimvlkdkfqvavngkhtllyg
    hrigpekidtlgiygkvnihsigfs
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3ap6D (D:)
    mmlslnnlqniiynpvipfvgtipdqldpgtlivirghvpsdadrfqvdlqngssvkpra
    dvafhfnprfkragcivcntlinekwgreeitydtpfkreksfeivimvlkdkfqvavng
    khtllyghrigpekidtlgiygkvnihsigfsfs
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ap6D (D:)
    lqniiynpvipfvgtipdqldpgtlivirghvpsdadrfqvdlqngssvkpradvafhfn
    prfkragcivcntlinekwgreeitydtpfkreksfeivimvlkdkfqvavngkhtllyg
    hrigpekidtlgiygkvnihsigfsfs