PDB entry 3ap4

View 3ap4 on RCSB PDB site
Description: Crystal structure of the galectin-8 N-terminal carbohydrate recognition domain in complex with lactose
Class: Sugar Binding Protein
Keywords: Beta-Sandwich, Galectin, Carbohydrate/Sugar Binding, Sugar Binding Protein
Deposited on 2010-10-11, released 2011-01-26
The last revision prior to the SCOPe 2.05 freeze date was dated 2014-01-15, with a file datestamp of 2014-01-10.
Experiment type: XRAY
Resolution: 2.33 Å
R-factor: 0.194
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Galectin-8
    Species: Homo sapiens [TaxId:9606]
    Gene: LGALS8
    Database cross-references and differences (RAF-indexed):
    • Uniprot O00214
      • see remark 999 (55)
    Domains in SCOPe 2.05: d3ap4a_
  • Chain 'B':
    Compound: Galectin-8
    Species: Homo sapiens [TaxId:9606]
    Gene: LGALS8
    Database cross-references and differences (RAF-indexed):
    • Uniprot O00214
      • see remark 999 (55)
    Domains in SCOPe 2.05: d3ap4b_
  • Chain 'C':
    Compound: Galectin-8
    Species: Homo sapiens [TaxId:9606]
    Gene: LGALS8
    Database cross-references and differences (RAF-indexed):
    • Uniprot O00214
      • see remark 999 (55)
    Domains in SCOPe 2.05: d3ap4c_
  • Chain 'D':
    Compound: Galectin-8
    Species: Homo sapiens [TaxId:9606]
    Gene: LGALS8
    Database cross-references and differences (RAF-indexed):
    • Uniprot O00214 (Start-153)
      • see remark 999 (55)
    Domains in SCOPe 2.05: d3ap4d_
  • Heterogens: LBT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3ap4A (A:)
    mmlslnnlqniiynpvipfvgtipdqldpgtlivirghvpsdadrfqvdlqngssvkpra
    dvafhfnprfkragcivcntlinekwgreeitydtpfkreksfeivimvlkdkfqvavng
    khtllyghrigpekidtlgiygkvnihsigfsfs
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ap4A (A:)
    lqniiynpvipfvgtipdqldpgtlivirghvpsdadrfqvdlqngssvkpradvafhfn
    prfkragcivcntlinekwgreeitydtpfkreksfeivimvlkdkfqvavngkhtllyg
    hrigpekidtlgiygkvnihsigfsf
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3ap4B (B:)
    mmlslnnlqniiynpvipfvgtipdqldpgtlivirghvpsdadrfqvdlqngssvkpra
    dvafhfnprfkragcivcntlinekwgreeitydtpfkreksfeivimvlkdkfqvavng
    khtllyghrigpekidtlgiygkvnihsigfsfs
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ap4B (B:)
    lqniiynpvipfvgtipdqldpgtlivirghvpsdadrfqvdlqngssvkpradvafhfn
    prfkragcivcntlinekwgreeitydtpfkreksfeivimvlkdkfqvavngkhtllyg
    hrigpekidtlgiygkvnihsigfsf
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3ap4C (C:)
    mmlslnnlqniiynpvipfvgtipdqldpgtlivirghvpsdadrfqvdlqngssvkpra
    dvafhfnprfkragcivcntlinekwgreeitydtpfkreksfeivimvlkdkfqvavng
    khtllyghrigpekidtlgiygkvnihsigfsfs
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ap4C (C:)
    nlqniiynpvipfvgtipdqldpgtlivirghvpsdadrfqvdlqngssvkpradvafhf
    nprfkragcivcntlinekwgreeitydtpfkreksfeivimvlkdkfqvavngkhtlly
    ghrigpekidtlgiygkvnihsigfsf
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3ap4D (D:)
    mmlslnnlqniiynpvipfvgtipdqldpgtlivirghvpsdadrfqvdlqngssvkpra
    dvafhfnprfkragcivcntlinekwgreeitydtpfkreksfeivimvlkdkfqvavng
    khtllyghrigpekidtlgiygkvnihsigfsfs
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ap4D (D:)
    lqniiynpvipfvgtipdqldpgtlivirghvpsdadrfqvdlqngssvkpradvafhfn
    prfkragcivcntlinekwgreeitydtpfkreksfeivimvlkdkfqvavngkhtllyg
    hrigpekidtlgiygkvnihsigfsfs