PDB entry 3alq
View 3alq on RCSB PDB site
Description: Crystal structure of TNF-TNFR2 complex
Class: cytokine/cytokine receptor
Keywords: LIGAND-RECEPTOR COMPLEX, CYTOKINE, CYTOKINE-CYTOKINE RECEPTOR complex
Deposited on
2010-08-06, released
2010-11-17
The last revision prior to the SCOPe 2.08 freeze date was dated
2010-12-01, with a file datestamp of
2010-11-26.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.22
AEROSPACI score: 0.23
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Tumor necrosis factor
Species: Homo sapiens [TaxId:9606]
Gene: TNF, TNFA, TNFSF2
Database cross-references and differences (RAF-indexed):
- Uniprot P01375 (Start-156)
- engineered mutation (10)
- engineered mutation (64)
- engineered mutation (89)
- engineered mutation (97)
- engineered mutation (111)
- engineered mutation (127)
Domains in SCOPe 2.08: d3alqa_ - Chain 'B':
Compound: Tumor necrosis factor
Species: Homo sapiens [TaxId:9606]
Gene: TNF, TNFA, TNFSF2
Database cross-references and differences (RAF-indexed):
- Uniprot P01375 (Start-156)
- engineered mutation (10)
- engineered mutation (64)
- engineered mutation (89)
- engineered mutation (97)
- engineered mutation (111)
- engineered mutation (127)
Domains in SCOPe 2.08: d3alqb_ - Chain 'C':
Compound: Tumor necrosis factor
Species: Homo sapiens [TaxId:9606]
Gene: TNF, TNFA, TNFSF2
Database cross-references and differences (RAF-indexed):
- Uniprot P01375 (Start-156)
- engineered mutation (10)
- engineered mutation (64)
- engineered mutation (89)
- engineered mutation (97)
- engineered mutation (111)
- engineered mutation (127)
Domains in SCOPe 2.08: d3alqc_ - Chain 'D':
Compound: Tumor necrosis factor
Species: Homo sapiens [TaxId:9606]
Gene: TNF, TNFA, TNFSF2
Database cross-references and differences (RAF-indexed):
- Uniprot P01375 (Start-156)
- engineered mutation (10)
- engineered mutation (64)
- engineered mutation (89)
- engineered mutation (97)
- engineered mutation (111)
- engineered mutation (127)
Domains in SCOPe 2.08: d3alqd_ - Chain 'E':
Compound: Tumor necrosis factor
Species: Homo sapiens [TaxId:9606]
Gene: TNF, TNFA, TNFSF2
Database cross-references and differences (RAF-indexed):
- Uniprot P01375 (Start-156)
- engineered mutation (10)
- engineered mutation (64)
- engineered mutation (89)
- engineered mutation (97)
- engineered mutation (111)
- engineered mutation (127)
Domains in SCOPe 2.08: d3alqe_ - Chain 'F':
Compound: Tumor necrosis factor
Species: Homo sapiens [TaxId:9606]
Gene: TNF, TNFA, TNFSF2
Database cross-references and differences (RAF-indexed):
- Uniprot P01375 (Start-156)
- engineered mutation (10)
- engineered mutation (64)
- engineered mutation (89)
- engineered mutation (97)
- engineered mutation (111)
- engineered mutation (127)
Domains in SCOPe 2.08: d3alqf_ - Chain 'R':
Compound: Tumor necrosis factor receptor superfamily member 1B
Species: Homo sapiens [TaxId:9606]
Gene: TNFBR, TNFR2, TNFRSF1B
Database cross-references and differences (RAF-indexed):
- Chain 'S':
Compound: Tumor necrosis factor receptor superfamily member 1B
Species: Homo sapiens [TaxId:9606]
Gene: TNFBR, TNFR2, TNFRSF1B
Database cross-references and differences (RAF-indexed):
- Chain 'T':
Compound: Tumor necrosis factor receptor superfamily member 1B
Species: Homo sapiens [TaxId:9606]
Gene: TNFBR, TNFR2, TNFRSF1B
Database cross-references and differences (RAF-indexed):
- Chain 'U':
Compound: Tumor necrosis factor receptor superfamily member 1B
Species: Homo sapiens [TaxId:9606]
Gene: TNFBR, TNFR2, TNFRSF1B
Database cross-references and differences (RAF-indexed):
- Chain 'V':
Compound: Tumor necrosis factor receptor superfamily member 1B
Species: Homo sapiens [TaxId:9606]
Gene: TNFBR, TNFR2, TNFRSF1B
Database cross-references and differences (RAF-indexed):
- Chain 'W':
Compound: Tumor necrosis factor receptor superfamily member 1B
Species: Homo sapiens [TaxId:9606]
Gene: TNFBR, TNFR2, TNFRSF1B
Database cross-references and differences (RAF-indexed):
- Heterogens: CO, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3alqA (A:)
vrsssrtpsdmpvahvvanpqaegqlqwlnrranallangvelrdnqlvvpseglyliys
qvlfsgqgcpsthvllthtisriavsyqtpvnllsairspcqretpegaeanpwyepiyl
ggvfqlepgdrlsaeinrpdyldfaesgqvyfgiial
Sequence, based on observed residues (ATOM records): (download)
>3alqA (A:)
sdmpvahvvanpqaegqlqwlnrranallangvelrdnqlvvpseglyliysqvlfsgqg
cpsthvllthtisriavsyqtpvnllsairspcqanpwyepiylggvfqlepgdrlsaei
nrpdyldfaesgqvyfgiial
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3alqB (B:)
vrsssrtpsdmpvahvvanpqaegqlqwlnrranallangvelrdnqlvvpseglyliys
qvlfsgqgcpsthvllthtisriavsyqtpvnllsairspcqretpegaeanpwyepiyl
ggvfqlepgdrlsaeinrpdyldfaesgqvyfgiial
Sequence, based on observed residues (ATOM records): (download)
>3alqB (B:)
sdmpvahvvanpqaegqlqwlnrranallangvelrdnqlvvpseglyliysqvlfsgqg
cpsthvllthtisriavsyqtpvnllsairspcqanpwyepiylggvfqlepgdrlsaei
nrpdyldfaesgqvyfgiial
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3alqC (C:)
vrsssrtpsdmpvahvvanpqaegqlqwlnrranallangvelrdnqlvvpseglyliys
qvlfsgqgcpsthvllthtisriavsyqtpvnllsairspcqretpegaeanpwyepiyl
ggvfqlepgdrlsaeinrpdyldfaesgqvyfgiial
Sequence, based on observed residues (ATOM records): (download)
>3alqC (C:)
sdmpvahvvanpqaegqlqwlnrranallangvelrdnqlvvpseglyliysqvlfsgqg
cpsthvllthtisriavsyqtpvnllsairspcqanpwyepiylggvfqlepgdrlsaei
nrpdyldfaesgqvyfgiial
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3alqD (D:)
vrsssrtpsdmpvahvvanpqaegqlqwlnrranallangvelrdnqlvvpseglyliys
qvlfsgqgcpsthvllthtisriavsyqtpvnllsairspcqretpegaeanpwyepiyl
ggvfqlepgdrlsaeinrpdyldfaesgqvyfgiial
Sequence, based on observed residues (ATOM records): (download)
>3alqD (D:)
sdmpvahvvanpqaegqlqwlnrranallangvelrdnqlvvpseglyliysqvlfsgqg
cpsthvllthtisriavsyqtpvnllsairspcqanpwyepiylggvfqlepgdrlsaei
nrpdyldfaesgqvyfgiial
- Chain 'E':
Sequence, based on SEQRES records: (download)
>3alqE (E:)
vrsssrtpsdmpvahvvanpqaegqlqwlnrranallangvelrdnqlvvpseglyliys
qvlfsgqgcpsthvllthtisriavsyqtpvnllsairspcqretpegaeanpwyepiyl
ggvfqlepgdrlsaeinrpdyldfaesgqvyfgiial
Sequence, based on observed residues (ATOM records): (download)
>3alqE (E:)
sdmpvahvvanpqaegqlqwlnrranallangvelrdnqlvvpseglyliysqvlfsgqg
cpsthvllthtisriavsyqtpvnllsairspcqanpwyepiylggvfqlepgdrlsaei
nrpdyldfaesgqvyfgiial
- Chain 'F':
Sequence, based on SEQRES records: (download)
>3alqF (F:)
vrsssrtpsdmpvahvvanpqaegqlqwlnrranallangvelrdnqlvvpseglyliys
qvlfsgqgcpsthvllthtisriavsyqtpvnllsairspcqretpegaeanpwyepiyl
ggvfqlepgdrlsaeinrpdyldfaesgqvyfgiial
Sequence, based on observed residues (ATOM records): (download)
>3alqF (F:)
sdmpvahvvanpqaegqlqwlnrranallangvelrdnqlvvpseglyliysqvlfsgqg
cpsthvllthtisriavsyqtpvnllsairspcqanpwyepiylggvfqlepgdrlsaei
nrpdyldfaesgqvyfgiial
- Chain 'R':
No sequence available.
- Chain 'S':
No sequence available.
- Chain 'T':
No sequence available.
- Chain 'U':
No sequence available.
- Chain 'V':
No sequence available.
- Chain 'W':
No sequence available.