PDB entry 3ala

View 3ala on RCSB PDB site
Description: crystal structure of vascular adhesion protein-1 in space group c2
Deposited on 2010-07-29, released 2010-12-15
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Membrane primary amine oxidase
    Species: Homo sapiens [TaxId:9606]
    Gene: AOC3, VAP1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Membrane primary amine oxidase
    Species: Homo sapiens [TaxId:9606]
    Gene: AOC3, VAP1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Membrane primary amine oxidase
    Species: Homo sapiens [TaxId:9606]
    Gene: AOC3, VAP1
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Membrane primary amine oxidase
    Species: Homo sapiens [TaxId:9606]
    Gene: AOC3, VAP1
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Membrane primary amine oxidase
    Species: Homo sapiens [TaxId:9606]
    Gene: AOC3, VAP1
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Membrane primary amine oxidase
    Species: Homo sapiens [TaxId:9606]
    Gene: AOC3, VAP1
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Membrane primary amine oxidase
    Species: Homo sapiens [TaxId:9606]
    Gene: AOC3, VAP1
    Database cross-references and differences (RAF-indexed):
  • Heterogens: CU, CA, GOL, NAG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3alaA (A:)
divdykddddkenlyfqgepsqlphcpsvspsaqpwthpgqsqlfadlsreeltavmrfl
tqrlgpglvdaaqarpsdncvfsvelqlppkaaalahldrgsppparealaivffgrqpq
pnvselvvgplphpsymrdvtverhggplpyhrrpvlfqeyldidqmifnrelpqasgll
hhccfykhrgrnlvtmttaprglqsgdratwfglyynisgagfflhhvglellvnhkald
parwtiqkvfyqgryydslaqleaqfeaglvnvvlipdngtggswslkspvppgpapplq
fypqgprfsvqgsrvasslwtfsfglgafsgprifdvrfqgerlvyeislqealaiyggn
spaamttryvdggfgmgkyttpltrgvdcpylatyvdwhfllesqapktirdafcvfeqn
qglplrrhhsdlyshyfgglaetvlvvrsmstllnydyvwdtvfhpsgaieirfyatgyi
ssaflfgatgkygnqvsehtlgtvhthsahfkvdldvaglenwvwaedmvfvpmavpwsp
ehqlqrlqvtrkllemeeqaaflvgsatprylylasnhsnkwghprgyriqmlsfagepl
pqnssmargfsweryqlavtqrkeeepssssvfnqndpwaptvdfsdfinnetiagkdlv
awvtagflhiphaedipntvtvgngvgfflrpynffdedpsfysadsiyfrgdqdagace
vnplaclpqaaacapdlpafshggfshn

    Sequence, based on observed residues (ATOM records):
    >3alaA (A:)
phcsqlfadlsreeltavmrfltqrlgpglvdaaqarpsdncvfsvelqlppkaaalahl
drgsppparealaivffgrqpqpnvselvvgplphpsymrdvtverhggplpyhrrpvlf
qeyldidqmifnrelpqasgllhhccfykrnlvtmttaprglqsgdratwfglyynisga
gfflhhvglellvnhkaldparwtiqkvfyqgryydslaqleaqfeaglvnvvlipdngt
ggswslkspvppgpapplqfypqgprfsvqgsrvasslwtfsfglgafsgprifdvrfqg
erlvyeislqealaiyggnspaamttryvdggfgmgkyttpltrgvdcpylatyvdwhfl
lesqapktirdafcvfeqnqglplrrhhsdlyshyfgglaetvlvvrsmstllnydyvwd
tvfhpsgaieirfyatgyissaflfgatgkygnqvsehtlgtvhthsahfkvdldvagle
nwvwaedmvfvpmavpwspehqlqrlqvtrkllemeeqaaflvgsatprylylasnhsnk
wghprgyriqmlsfageplpqnssmargfsweryqlavtqrkeeepssssvfnqndpwap
tvdfsdfinnetiagkdlvawvtagflhiphaedipntvtvgngvgfflrpynffdedps
fysadsiyfrgdqdagacevnplaclpqaaacapdlpafshggfs

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3alaB (B:)
divdykddddkenlyfqgepsqlphcpsvspsaqpwthpgqsqlfadlsreeltavmrfl
tqrlgpglvdaaqarpsdncvfsvelqlppkaaalahldrgsppparealaivffgrqpq
pnvselvvgplphpsymrdvtverhggplpyhrrpvlfqeyldidqmifnrelpqasgll
hhccfykhrgrnlvtmttaprglqsgdratwfglyynisgagfflhhvglellvnhkald
parwtiqkvfyqgryydslaqleaqfeaglvnvvlipdngtggswslkspvppgpapplq
fypqgprfsvqgsrvasslwtfsfglgafsgprifdvrfqgerlvyeislqealaiyggn
spaamttryvdggfgmgkyttpltrgvdcpylatyvdwhfllesqapktirdafcvfeqn
qglplrrhhsdlyshyfgglaetvlvvrsmstllnydyvwdtvfhpsgaieirfyatgyi
ssaflfgatgkygnqvsehtlgtvhthsahfkvdldvaglenwvwaedmvfvpmavpwsp
ehqlqrlqvtrkllemeeqaaflvgsatprylylasnhsnkwghprgyriqmlsfagepl
pqnssmargfsweryqlavtqrkeeepssssvfnqndpwaptvdfsdfinnetiagkdlv
awvtagflhiphaedipntvtvgngvgfflrpynffdedpsfysadsiyfrgdqdagace
vnplaclpqaaacapdlpafshggfshn

    Sequence, based on observed residues (ATOM records):
    >3alaB (B:)
phcpssqlfadlsreeltavmrfltqrlgpglvdaaqarpsdncvfsvelqlppkaaala
hldrgsppparealaivffgrqpqpnvselvvgplphpsymrdvtverhggplpyhrrpv
lfqeyldidqmifnrelpqasgllhhccfykrnlvtmttaprglqsgdratwfglyynis
gagfflhhvglellvnhkaldparwtiqkvfyqgryydslaqleaqfeaglvnvvlipdn
gtggswslkspvppgpapplqfypqgprfsvqgsrvasslwtfsfglgafsgprifdvrf
qgerlvyeislqealaiyggnspaamttryvdggfgmgkyttpltrgvdcpylatyvdwh
fllesqapktirdafcvfeqnqglplrrhhsdlyshyfgglaetvlvvrsmstllnydyv
wdtvfhpsgaieirfyatgyissaflftgkygnqvsehtlgtvhthsahfkvdldvagle
nwvwaedmvfvpmavpwspehqlqrlqvtrkllemeeqaaflvgsatprylylasnhsnk
wghprgyriqmlsfageplpqnssmargfsweryqlavtqrkeeepssssvfnqndpwap
tvdfsdfinnetiagkdlvawvtagflhiphaedipntvtvgngvgfflrpynffdedps
fysadsiyfrgdqdagacevnplaclpqaaacapdlpafshggfs

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3alaC (C:)
divdykddddkenlyfqgepsqlphcpsvspsaqpwthpgqsqlfadlsreeltavmrfl
tqrlgpglvdaaqarpsdncvfsvelqlppkaaalahldrgsppparealaivffgrqpq
pnvselvvgplphpsymrdvtverhggplpyhrrpvlfqeyldidqmifnrelpqasgll
hhccfykhrgrnlvtmttaprglqsgdratwfglyynisgagfflhhvglellvnhkald
parwtiqkvfyqgryydslaqleaqfeaglvnvvlipdngtggswslkspvppgpapplq
fypqgprfsvqgsrvasslwtfsfglgafsgprifdvrfqgerlvyeislqealaiyggn
spaamttryvdggfgmgkyttpltrgvdcpylatyvdwhfllesqapktirdafcvfeqn
qglplrrhhsdlyshyfgglaetvlvvrsmstllnydyvwdtvfhpsgaieirfyatgyi
ssaflfgatgkygnqvsehtlgtvhthsahfkvdldvaglenwvwaedmvfvpmavpwsp
ehqlqrlqvtrkllemeeqaaflvgsatprylylasnhsnkwghprgyriqmlsfagepl
pqnssmargfsweryqlavtqrkeeepssssvfnqndpwaptvdfsdfinnetiagkdlv
awvtagflhiphaedipntvtvgngvgfflrpynffdedpsfysadsiyfrgdqdagace
vnplaclpqaaacapdlpafshggfshn

    Sequence, based on observed residues (ATOM records):
    >3alaC (C:)
psqlphcpssqlfadlsreeltavmrfltqrlgpglvdaaqarpsdncvfsvelqlppka
aalahldrgsppparealaivffgrqpqpnvselvvgplphpsymrdvtverhggplpyh
rrpvlfqeyldidqmifnrelpqasgllhhccfykrnlvtmttaprglqsgdratwfgly
ynisgagfflhhvglellvnhkaldparwtiqkvfyqgryydslaqleaqfeaglvnvvl
ipdngtggswslkspvppgpapplqfypqgprfsvqgsrvasslwtfsfglgafsgprif
dvrfqgerlvyeislqealaiyggnspaamttryvdggfgmgkyttpltrgvdcpylaty
vdwhfllesqapktirdafcvfeqnqglplrrhhsdlyshyfgglaetvlvvrsmstlln
ydyvwdtvfhpsgaieirfyatgyissaflfgkygnqvsehtlgtvhthsahfkvdldva
glenwvwaedmvfvpmavpwspehqlqrlqvtrkllemeeqaaflvgsatprylylasnh
snkwghprgyriqmlsfageplpqnssmargfsweryqlavtqrkeeepssssvfnqndp
waptvdfsdfinnetiagkdlvawvtagflhiphaedipntvtvgngvgfflrpynffde
dpsfysadsiyfrgdqdagacevnplaclpqaaacapdlpafshggfsh

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3alaD (D:)
divdykddddkenlyfqgepsqlphcpsvspsaqpwthpgqsqlfadlsreeltavmrfl
tqrlgpglvdaaqarpsdncvfsvelqlppkaaalahldrgsppparealaivffgrqpq
pnvselvvgplphpsymrdvtverhggplpyhrrpvlfqeyldidqmifnrelpqasgll
hhccfykhrgrnlvtmttaprglqsgdratwfglyynisgagfflhhvglellvnhkald
parwtiqkvfyqgryydslaqleaqfeaglvnvvlipdngtggswslkspvppgpapplq
fypqgprfsvqgsrvasslwtfsfglgafsgprifdvrfqgerlvyeislqealaiyggn
spaamttryvdggfgmgkyttpltrgvdcpylatyvdwhfllesqapktirdafcvfeqn
qglplrrhhsdlyshyfgglaetvlvvrsmstllnydyvwdtvfhpsgaieirfyatgyi
ssaflfgatgkygnqvsehtlgtvhthsahfkvdldvaglenwvwaedmvfvpmavpwsp
ehqlqrlqvtrkllemeeqaaflvgsatprylylasnhsnkwghprgyriqmlsfagepl
pqnssmargfsweryqlavtqrkeeepssssvfnqndpwaptvdfsdfinnetiagkdlv
awvtagflhiphaedipntvtvgngvgfflrpynffdedpsfysadsiyfrgdqdagace
vnplaclpqaaacapdlpafshggfshn

    Sequence, based on observed residues (ATOM records):
    >3alaD (D:)
sqlphcpssqlfadlsreeltavmrfltqrlgpglvdaaqarpsdncvfsvelqlppkaa
alahldrgsppparealaivffgrqpqpnvselvvgplphpsymrdvtverhggplpyhr
rpvlfqeyldidqmifnrelpqasgllhhccfykrnlvtmttaprglqsgdratwfglyy
nisgagfflhhvglellvnhkaldparwtiqkvfyqgryydslaqleaqfeaglvnvvli
pdngtggswslkspvppgpapplqfypqgprfsvqgsrvasslwtfsfglgafsgprifd
vrfqgerlvyeislqealaiyggnspaamttryvdggfgmgkyttpltrgvdcpylatyv
dwhfllesqapktirdafcvfeqnqglplrrhhsdlyshyfgglaetvlvvrsmstllny
dyvwdtvfhpsgaieirfyatgyissaflfgatgkygnqvsehtlgtvhthsahfkvdld
vaglenwvwaedmvfvpmavpwspehqlqrlqvtrkllemeeqaaflvgsatprylylas
nhsnkwghprgyriqmlsfageplpqnssmargfsweryqlavtqrkeeepssssvfnqn
dpwaptvdfsdfinnetiagkdlvawvtagflhiphaedipntvtvgngvgfflrpynff
dedpsfysadsiyfrgdqdagacevnplaclpqaaacapdlpafshggfsh

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3alaE (E:)
divdykddddkenlyfqgepsqlphcpsvspsaqpwthpgqsqlfadlsreeltavmrfl
tqrlgpglvdaaqarpsdncvfsvelqlppkaaalahldrgsppparealaivffgrqpq
pnvselvvgplphpsymrdvtverhggplpyhrrpvlfqeyldidqmifnrelpqasgll
hhccfykhrgrnlvtmttaprglqsgdratwfglyynisgagfflhhvglellvnhkald
parwtiqkvfyqgryydslaqleaqfeaglvnvvlipdngtggswslkspvppgpapplq
fypqgprfsvqgsrvasslwtfsfglgafsgprifdvrfqgerlvyeislqealaiyggn
spaamttryvdggfgmgkyttpltrgvdcpylatyvdwhfllesqapktirdafcvfeqn
qglplrrhhsdlyshyfgglaetvlvvrsmstllnydyvwdtvfhpsgaieirfyatgyi
ssaflfgatgkygnqvsehtlgtvhthsahfkvdldvaglenwvwaedmvfvpmavpwsp
ehqlqrlqvtrkllemeeqaaflvgsatprylylasnhsnkwghprgyriqmlsfagepl
pqnssmargfsweryqlavtqrkeeepssssvfnqndpwaptvdfsdfinnetiagkdlv
awvtagflhiphaedipntvtvgngvgfflrpynffdedpsfysadsiyfrgdqdagace
vnplaclpqaaacapdlpafshggfshn

    Sequence, based on observed residues (ATOM records):
    >3alaE (E:)
phcqlfadlsreeltavmrfltqrlgpglvdaaqarpsdncvfsvelqlppkaaalahld
rgsppparealaivffgrqpqpnvselvvgplphpsymrdvtverhggplpyhrrpvlfq
eyldidqmifnrelpqasgllhhccfykrnlvtmttaprglqsgdratwfglyynisgag
fflhhvglellvnhkaldparwtiqkvfyqgryydslaqleaqfeaglvnvvlipdngtg
gswslkspvppgpapplqfypqgprfsvqgsrvasslwtfsfglgafsgprifdvrfqge
rlvyeislqealaiyggnspaamttryvdggfgmgkyttpltrgvdcpylatyvdwhfll
esqapktirdafcvfeqnqglplrrhhsdlyshyfgglaetvlvvrsmstllnydyvwdt
vfhpsgaieirfyatgyissaflfggkygnqvsehtlgtvhthsahfkvdldvaglenwv
waedmvfvpmavpwspehqlqrlqvtrkllemeeqaaflvgsatprylylasnhsnkwgh
prgyriqmlsfageplpqnssmargfsweryqlavtqrkeeepssssvfnqndpwaptvd
fsdfinnetiagkdlvawvtagflhiphaedipntvtvgngvgfflrpynffdedpsfys
adsiyfrgdqdagacevnplaclpqaaacapdlpafshggfs

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3alaF (F:)
divdykddddkenlyfqgepsqlphcpsvspsaqpwthpgqsqlfadlsreeltavmrfl
tqrlgpglvdaaqarpsdncvfsvelqlppkaaalahldrgsppparealaivffgrqpq
pnvselvvgplphpsymrdvtverhggplpyhrrpvlfqeyldidqmifnrelpqasgll
hhccfykhrgrnlvtmttaprglqsgdratwfglyynisgagfflhhvglellvnhkald
parwtiqkvfyqgryydslaqleaqfeaglvnvvlipdngtggswslkspvppgpapplq
fypqgprfsvqgsrvasslwtfsfglgafsgprifdvrfqgerlvyeislqealaiyggn
spaamttryvdggfgmgkyttpltrgvdcpylatyvdwhfllesqapktirdafcvfeqn
qglplrrhhsdlyshyfgglaetvlvvrsmstllnydyvwdtvfhpsgaieirfyatgyi
ssaflfgatgkygnqvsehtlgtvhthsahfkvdldvaglenwvwaedmvfvpmavpwsp
ehqlqrlqvtrkllemeeqaaflvgsatprylylasnhsnkwghprgyriqmlsfagepl
pqnssmargfsweryqlavtqrkeeepssssvfnqndpwaptvdfsdfinnetiagkdlv
awvtagflhiphaedipntvtvgngvgfflrpynffdedpsfysadsiyfrgdqdagace
vnplaclpqaaacapdlpafshggfshn

    Sequence, based on observed residues (ATOM records):
    >3alaF (F:)
csqlfadlsreeltavmrfltqrlgpglvdaaqarpsdncvfsvelqlppkaaalahldr
gsppparealaivffgrqpqpnvselvvgplphpsymrdvtverhggplpyhrrpvlfqe
yldidqmifnrelpqasgllhhccfykrnlvtmttaprglqsgdratwfglyynisgagf
flhhvglellvnhkaldparwtiqkvfyqgryydslaqleaqfeaglvnvvlipdngtgg
swslkspvppgpapplqfypqgprfsvqgsrvasslwtfsfglgafsgprifdvrfqger
lvyeislqealaiyggnspaamttryvdggfgmgkyttpltrgvdcpylatyvdwhflle
sqapktirdafcvfeqnqglplrrhhsdlyshyfgglaetvlvvrsmstllnydyvwdtv
fhpsgaieirfyatgyissaflftgkygnqvsehtlgtvhthsahfkvdldvaglenwvw
aedmvfvpmavpwspehqlqrlqvtrkllemeeqaaflvgsatprylylasnhsnkwghp
rgyriqmlsfageplpqnssmargfsweryqlavtqrkeeepssssvfnqndpwaptvdf
sdfinnetiagkdlvawvtagflhiphaedipntvtvgngvgfflrpynffdedpsfysa
dsiyfrgdqdagacevnplaclpqaaacapdlpafshggfs

  • Chain 'G':
    Sequence, based on SEQRES records:
    >3alaG (G:)
divdykddddkenlyfqgepsqlphcpsvspsaqpwthpgqsqlfadlsreeltavmrfl
tqrlgpglvdaaqarpsdncvfsvelqlppkaaalahldrgsppparealaivffgrqpq
pnvselvvgplphpsymrdvtverhggplpyhrrpvlfqeyldidqmifnrelpqasgll
hhccfykhrgrnlvtmttaprglqsgdratwfglyynisgagfflhhvglellvnhkald
parwtiqkvfyqgryydslaqleaqfeaglvnvvlipdngtggswslkspvppgpapplq
fypqgprfsvqgsrvasslwtfsfglgafsgprifdvrfqgerlvyeislqealaiyggn
spaamttryvdggfgmgkyttpltrgvdcpylatyvdwhfllesqapktirdafcvfeqn
qglplrrhhsdlyshyfgglaetvlvvrsmstllnydyvwdtvfhpsgaieirfyatgyi
ssaflfgatgkygnqvsehtlgtvhthsahfkvdldvaglenwvwaedmvfvpmavpwsp
ehqlqrlqvtrkllemeeqaaflvgsatprylylasnhsnkwghprgyriqmlsfagepl
pqnssmargfsweryqlavtqrkeeepssssvfnqndpwaptvdfsdfinnetiagkdlv
awvtagflhiphaedipntvtvgngvgfflrpynffdedpsfysadsiyfrgdqdagace
vnplaclpqaaacapdlpafshggfshn

    Sequence, based on observed residues (ATOM records):
    >3alaG (G:)
lphcpsqlfadlsreeltavmrfltqrlgpglvdaaqarpsdncvfsvelqlppkaaala
hldrgsppparealaivffgrqpqpnvselvvgplphpsymrdvtverhggplpyhrrpv
lfqeyldidqmifnrelpqasgllhhccfykrnlvtmttaprglqsgdratwfglyynis
gagfflhhvglellvnhkaldparwtiqkvfyqgryydslaqleaqfeaglvnvvlipdn
gtggswslkspvppgpapplqfypqgprfsvqgsrvasslwtfsfglgafsgprifdvrf
qgerlvyeislqealaiyggnspaamttryvdggfgmgkyttpltrgvdcpylatyvdwh
fllesqapktirdafcvfeqnqglplrrhhsdlyshyfgglaetvlvvrsmstllnydyv
wdtvfhpsgaieirfyatgyissaflfgagkygnqvsehtlgtvhthsahfkvdldvagl
enwvwaedmvfvpmavpwspehqlqrlqvtrkllemeeqaaflvgsatprylylasnhsn
kwghprgyriqmlsfageplpqnssmargfsweryqlavtqrkeeepssssvfnqndpwa
ptvdfsdfinnetiagkdlvawvtagflhiphaedipntvtvgngvgfflrpynffdedp
sfysadsiyfrgdqdagacevnplaclpqaaacapdlpafshggfs