PDB entry 3ajv

View 3ajv on RCSB PDB site
Description: splicing endonuclease from aeropyrum pernix
Deposited on 2010-06-19, released 2010-11-17
The last revision was dated 2017-10-11, with a file datestamp of 2017-10-06.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative uncharacterized protein
    Species: Aeropyrum pernix [TaxId:272557]
    Gene: APE0685, APE1646, APE_0685
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: tRNA-splicing endonuclease
    Species: Aeropyrum pernix [TaxId:56636]
    Gene: endA, APE_1646.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9YBF1 (Start-185)
      • engineered mutation (132)
  • Chain 'C':
    Compound: Putative uncharacterized protein
    Species: Aeropyrum pernix [TaxId:272557]
    Gene: APE0685, APE1646, APE_0685
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: tRNA-splicing endonuclease
    Species: Aeropyrum pernix [TaxId:56636]
    Gene: endA, APE_1646.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9YBF1 (Start-185)
      • engineered mutation (132)
  • Heterogens: GOL, CL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3ajvA (A:)
mgsshhhhhhssglvprgshmgkgegevagckaaarlgvegvfveecfdgsycrnlerig
ylrkgrlepleaayqasrgmlcmgetrgwaaaveviaglglsldtalvyfdlrrkgrkpl
vgvrrgtlvyehggrvyevlvlsegyplkigslvewsrgasmdnhspivaivdrtglity
yearavrsiq

    Sequence, based on observed residues (ATOM records):
    >3ajvA (A:)
kgegevagckaaarlgvegvfveecfdgsycrnlerigylrkgrlepleaayqasrgmlc
mgetrgwaaaveviaglglsldtalvyfdlrrkgrkplvgvrrgtlvyehggrvyevlvl
segyplkigslvewsrgasmdnhspivaivdrtglityyearavrsiq

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3ajvB (B:)
mgdrcapikasgvligdsvlvtdveqarslyscgyygqpldvekprgadfegplrlslie
slylaekgvlevakpdgssvgvedlrtavrgnprfsmlyniyrdlrergfvvrsglkfgs
dfavyrlgpgidaapfivhayspednidpveivragrlshsvrkkfvfavtrggdvsylm
idwfrp

    Sequence, based on observed residues (ATOM records):
    >3ajvB (B:)
pikasgvligdsvlvtdveqarslyscgyygqpldvekprgadfegplrlslieslylae
kgvlevakpdgssvgvedlrtavrgnprfsmlyniyrdlrergfvvrsglkfgsdfavyr
lgpgidaapfivhayspednidpveivragrlshsvrkkfvfavtrggdvsylmidwfrp

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3ajvC (C:)
mgsshhhhhhssglvprgshmgkgegevagckaaarlgvegvfveecfdgsycrnlerig
ylrkgrlepleaayqasrgmlcmgetrgwaaaveviaglglsldtalvyfdlrrkgrkpl
vgvrrgtlvyehggrvyevlvlsegyplkigslvewsrgasmdnhspivaivdrtglity
yearavrsiq

    Sequence, based on observed residues (ATOM records):
    >3ajvC (C:)
gckaaarlgvegvfveecfdgsycrnlerigylrkgrlepleaayqasrgmlcmgetrgw
aaaveviaglglsldtalvyfdlrrkgrkplvgvrrgtlvyehggrvyevlvlsegyplk
igslvewsrgasmdnhspivaivdrtglityyearavrsiq

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3ajvD (D:)
mgdrcapikasgvligdsvlvtdveqarslyscgyygqpldvekprgadfegplrlslie
slylaekgvlevakpdgssvgvedlrtavrgnprfsmlyniyrdlrergfvvrsglkfgs
dfavyrlgpgidaapfivhayspednidpveivragrlshsvrkkfvfavtrggdvsylm
idwfrp

    Sequence, based on observed residues (ATOM records):
    >3ajvD (D:)
kasgvligdsvlvtdveqarslyscgyygqpldvekprgadfegplrlslieslylaekg
vlevakpdgssvgvedlrtavrgnprfsmlyniyrdlrergfvvrsglkfgsdfavyrlg
pgidaapfivhayspednidpveivragrlshsvrkkfvfavtrggdvsylmidwfrp