PDB entry 3agv
View 3agv on RCSB PDB site
Description: Crystal structure of a human IgG-aptamer complex
Class: Immune System/RNA
Keywords: IgG, RNA Aptamer, Immune System-RNA complex
Deposited on
2010-04-08, released
2010-11-10
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-07-29, with a file datestamp of
2020-07-04.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: N/A
AEROSPACI score: 0.34
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Ig gamma-1 chain C region
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3agva1, d3agva2 - Chain 'B':
Compound: Ig gamma-1 chain C region
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3agvb1, d3agvb2 - Chain 'S':
Compound: 5'-r(*gp*gp*ap*gp*gp*(uft)p*gp*(cfz)p*(uft)p*(cfz)p*(cfz)p*gp*ap*ap*a*gp*gp*ap*ap*(cfz)p*(uft)p*(cfz)p*(cfz)p*a)-3'
- Chain 'U':
Compound: 5'-r(*gp*gp*ap*gp*gp*(uft)p*gp*(cfz)p*(uft)p*(cfz)p*(cfz)p*gp*ap*ap*a*gp*gp*ap*ap*(cfz)p*(uft)p*(cfz)p*(cfz)p*a)-3'
- Heterogens: CA, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3agvA (A:)
gpsvflfppkpkdtlmisrtpevtcvvvdvshedpevkfnwyvdgvevhnaktkpreeqy
nstyrvvsvltvlhqdwlngkeykckvsnkalpapiektiskakgqprepqvytlppsrd
eltknqvsltclvkgfypsdiavewesngqpennykttppvldsdgsfflyskltvdksr
wqqgnvfscsvmhealhnhytqkslslspgk
Sequence, based on observed residues (ATOM records): (download)
>3agvA (A:)
flfppkpkdtlmisrtpevtcvevkfnwyvdgvevhnaktkpreeqyvvsvltvlhqdwl
ngkeykcktiskakgqprepqvytlppsrdeltknqvsltclvkgfypsdiavewesngq
pennykttppvldsdgsfflyskltvdksrwqqgnvfscsvmhealhnhytqkslsl
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3agvB (B:)
gpsvflfppkpkdtlmisrtpevtcvvvdvshedpevkfnwyvdgvevhnaktkpreeqy
nstyrvvsvltvlhqdwlngkeykckvsnkalpapiektiskakgqprepqvytlppsrd
eltknqvsltclvkgfypsdiavewesngqpennykttppvldsdgsfflyskltvdksr
wqqgnvfscsvmhealhnhytqkslslspgk
Sequence, based on observed residues (ATOM records): (download)
>3agvB (B:)
gpsvflfppkpkdtlmisrtpevtcvvvdvshedpevkfnwyvdgvevhnaktkpreeqy
nstyrvvsvltvlhqdwlngkeykckvsnkalpapiektiskakgqprepqvytlppsrd
eltknqvsltclvkgfypsdiavewesngqpennykttppvldsdgsfflyskltvdksr
wqqgnvfscsvmhealhnhytqkslsls
- Chain 'S':
No sequence available.
- Chain 'U':
No sequence available.