SCOPe 2.06: Structural Classification of Proteins

PDB entry 3agj

View 3agj on RCSB PDB site
Description: Crystal structure of archaeal Pelota and GTP-bound EF1 alpha complex
Class: translation/hydrolase
Keywords: GTP binding, TRANSLATION-HYDROLASE complex
Deposited on 2010-04-01, released 2010-10-06
The last revision prior to the SCOPe 2.06 freeze date was dated 2014-09-03, with a file datestamp of 2014-08-29.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.21
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Elongation factor 1-alpha
Species: Aeropyrum pernix [TaxId:56636]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9YAV0
Domains in SCOPe 2.06: d3agja4, d3agja5, d3agja6
Chain 'B':
Compound: Protein pelota homolog
Species: Aeropyrum pernix [TaxId:56636]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9YAZ5 (2-End)
  - expression tag (0-1)
  - conflict (39)
  - conflict (123)
Chain 'C':
Compound: Elongation factor 1-alpha
Species: Aeropyrum pernix [TaxId:56636]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9YAV0
Domains in SCOPe 2.06: d3agjc4, d3agjc5, d3agjc6
Chain 'D':
Compound: Protein pelota homolog
Species: Aeropyrum pernix [TaxId:56636]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9YAZ5 (2-End)
  - expression tag (0-1)
  - conflict (39)
  - conflict (123)
Chain 'E':
Compound: Elongation factor 1-alpha
Species: Aeropyrum pernix [TaxId:56636]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9YAV0
Domains in SCOPe 2.06: d3agje4, d3agje5, d3agje6
Chain 'F':
Compound: Protein pelota homolog
Species: Aeropyrum pernix [TaxId:56636]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9YAZ5 (2-End)
  - expression tag (1)
  - conflict (39)
  - conflict (123)
Chain 'G':
Compound: Elongation factor 1-alpha
Species: Aeropyrum pernix [TaxId:56636]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9YAV0
Domains in SCOPe 2.06: d3agjg4, d3agjg5, d3agjg6
Chain 'H':
Compound: Protein pelota homolog
Species: Aeropyrum pernix [TaxId:56636]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9YAZ5 (2-End)
  - expression tag (0-1)
  - conflict (39)
  - conflict (123)
Heterogens: GTP, MG, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>3agjA (A:)
maekphmnlvvighvdhgkstlvghllyrlgyieekklkeleeqaksrgkesfkfawild
kmkeerergitidltfmkfetkkyvftiidapghrdfvknmitgasqadaailvvsarkg
efeagmstegqtrehlllartmgieqiivavnkmdapdvnydqkryefvvsvlkkfmkgl
gyqvdkipfipvsawkgdnlierspnmpwyngptlvealdqlqppakpvdkplripvqnv
ysipgagtvpvgrvetgvlrvgdkvvfmppgvvgevrsiemhyqqlqqaepgdnigfavr
gvsksdikrgdvaghldkpptvaeefearifviwhpsaitvgytpvihvhtasvssriie
ikakldpktgqvveqnpqflkagdaaivrfkpvkplvvekfseipqlgrfamrdmnrtvg
igivtdvkpakvdikak

Sequence, based on observed residues (ATOM records): (download)

>3agjA (A:)
kphmnlvvighvdhgkstlvghllyrlgyieekklkeleeqaksrgkesfkfawildkmk
eerergitidltfmkfetkkyvftiidapghrdfvknmitgasqadaailvvsarkgefe
agmstegqtrehlllartmgieqiivavnkmdapdvnydqkryefvvsvlkkfmkglgyq
vdkipfipvsawkgdnlierspnmpwyngptlvealdqlqppakpvdkplripvqnvysi
pgagtvpvgrvetgvlrvgdkvvfmppgvvgevrsiemhyqqlqqaepgdnigfavrgvs
ksdikrgdvaghldkpptvaeefearifviwhpsaitvgytpvihvhtasvssriieika
kldpktgqvveqnpqflkagdaaivrfkpvkplvvekfseipqlgrfamrdmnrtvgigi
vtdvkpakvdik

Chain 'B':
No sequence available.

Chain 'C':
Sequence, based on SEQRES records: (download)

>3agjC (C:)
maekphmnlvvighvdhgkstlvghllyrlgyieekklkeleeqaksrgkesfkfawild
kmkeerergitidltfmkfetkkyvftiidapghrdfvknmitgasqadaailvvsarkg
efeagmstegqtrehlllartmgieqiivavnkmdapdvnydqkryefvvsvlkkfmkgl
gyqvdkipfipvsawkgdnlierspnmpwyngptlvealdqlqppakpvdkplripvqnv
ysipgagtvpvgrvetgvlrvgdkvvfmppgvvgevrsiemhyqqlqqaepgdnigfavr
gvsksdikrgdvaghldkpptvaeefearifviwhpsaitvgytpvihvhtasvssriie
ikakldpktgqvveqnpqflkagdaaivrfkpvkplvvekfseipqlgrfamrdmnrtvg
igivtdvkpakvdikak

Sequence, based on observed residues (ATOM records): (download)

>3agjC (C:)
kphmnlvvighvdhgkstlvghllyrlgyieekklkeleeqaksrgkesfkfawildkmk
eerergitidltfmkfetkkyvftiidapghrdfvknmitgasqadaailvvsarkgefe
agmstegqtrehlllartmgieqiivavnkmdapdvnydqkryefvvsvlkkfmkglgyq
vdkipfipvsawkgdnlierspnmpwyngptlvealdqlqppakpvdkplripvqnvysi
pgagtvpvgrvetgvlrvgdkvvfmppgvvgevrsiemhyqqlqqaepgdnigfavrgvs
ksdikrgdvaghldkpptvaeefearifviwhpsaitvgytpvihvhtasvssriieika
kldpktgqvveqnpqflkagdaaivrfkpvkplvvekfseipqlgrfamrdmnrtvgigi
vtdvkpakvdi

Chain 'D':
No sequence available.

Chain 'E':
Sequence, based on SEQRES records: (download)

>3agjE (E:)
maekphmnlvvighvdhgkstlvghllyrlgyieekklkeleeqaksrgkesfkfawild
kmkeerergitidltfmkfetkkyvftiidapghrdfvknmitgasqadaailvvsarkg
efeagmstegqtrehlllartmgieqiivavnkmdapdvnydqkryefvvsvlkkfmkgl
gyqvdkipfipvsawkgdnlierspnmpwyngptlvealdqlqppakpvdkplripvqnv
ysipgagtvpvgrvetgvlrvgdkvvfmppgvvgevrsiemhyqqlqqaepgdnigfavr
gvsksdikrgdvaghldkpptvaeefearifviwhpsaitvgytpvihvhtasvssriie
ikakldpktgqvveqnpqflkagdaaivrfkpvkplvvekfseipqlgrfamrdmnrtvg
igivtdvkpakvdikak

Sequence, based on observed residues (ATOM records): (download)

>3agjE (E:)
ekphmnlvvighvdhgkstlvghllyrlgyieekklkeleeqaksrgkesfkfawildkm
keerergitidltfmkfetkkyvftiidapghrdfvknmitgasqadaailvvsarkgef
eagmstegqtrehlllartmgieqiivavnkmdapdvnydqkryefvvsvlkkfmkglgy
qvdkipfipvsawkgdnlierspnmpwyngptlvealdqlqppakpvdkplripvqnvys
ipgagtvpvgrvetgvlrvgdkvvfmppgvvgevrsiemhyqqlqqaepgdnigfavrgv
sksdikrgdvaghldkpptvaeefearifviwhpsaitvgytpvihvhtasvssriieik
akldpktgqvveqnpqflkagdaaivrfkpvkplvvekfseipqlgrfamrdmnrtvgig
ivtdvkpakv

Chain 'F':
No sequence available.

Chain 'G':
Sequence, based on SEQRES records: (download)

>3agjG (G:)
maekphmnlvvighvdhgkstlvghllyrlgyieekklkeleeqaksrgkesfkfawild
kmkeerergitidltfmkfetkkyvftiidapghrdfvknmitgasqadaailvvsarkg
efeagmstegqtrehlllartmgieqiivavnkmdapdvnydqkryefvvsvlkkfmkgl
gyqvdkipfipvsawkgdnlierspnmpwyngptlvealdqlqppakpvdkplripvqnv
ysipgagtvpvgrvetgvlrvgdkvvfmppgvvgevrsiemhyqqlqqaepgdnigfavr
gvsksdikrgdvaghldkpptvaeefearifviwhpsaitvgytpvihvhtasvssriie
ikakldpktgqvveqnpqflkagdaaivrfkpvkplvvekfseipqlgrfamrdmnrtvg
igivtdvkpakvdikak

Sequence, based on observed residues (ATOM records): (download)

>3agjG (G:)
ekphmnlvvighvdhgkstlvghllyrlgyieekklkeleeqaksrgkesfkfawildkm
keerergitidltfmkfetkkyvftiidapghrdfvknmitgasqadaailvvsarkgef
eagmstegqtrehlllartmgieqiivavnkmdapdvnydqkryefvvsvlkkfmkglgy
qvdkipfipvsawkgdnlierspnmpwyngptlvealdqlqppakpvdkplripvqnvys
ipgagtvpvgrvetgvlrvgdkvvfmppgvvgevrsiemhyqqlqqaepgdnigfavrgv
sksdikrgdvaghldkpptvaeefearifviwhpsaitvgytpvihvhtasvssriieik
akldpktgqvveqnpqflkagdaaivrfkpvkplvvekfseipqlgrfamrdmnrtvgig
ivtdvkpakvdi

Chain 'H':
No sequence available.