PDB entry 3afi

View 3afi on RCSB PDB site
Description: Crystal structure of DBJA (HIS-DBJA)
Class: hydrolase
Keywords: a/b-hydrolase, hydrolase
Deposited on 2010-03-02, released 2011-01-19
The last revision prior to the SCOPe 2.05 freeze date was dated 2011-01-19, with a file datestamp of 2011-01-14.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: 0.168
AEROSPACI score: 0.55 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: haloalkane dehalogenase
    Species: Bradyrhizobium japonicum [TaxId:224911]
    Gene: DBJA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P59337
      • expression tag (313-315)
    Domains in SCOPe 2.05: d3afia1
  • Chain 'B':
    Compound: haloalkane dehalogenase
    Species: Bradyrhizobium japonicum [TaxId:224911]
    Gene: DBJA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P59337
      • expression tag (313-315)
    Domains in SCOPe 2.05: d3afib1
  • Chain 'E':
    Compound: haloalkane dehalogenase
    Species: Bradyrhizobium japonicum [TaxId:224911]
    Gene: DBJA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P59337
      • expression tag (313-315)
    Domains in SCOPe 2.05: d3afie1
  • Chain 'F':
    Compound: haloalkane dehalogenase
    Species: Bradyrhizobium japonicum [TaxId:224911]
    Gene: DBJA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P59337
      • expression tag (313-315)
    Domains in SCOPe 2.05: d3afif1
  • Heterogens: CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3afiA (A:)
mskpieieirrapvlgssmayretgaqdapvvlflhgnptsshiwrnilplvspvahcia
pdligfgqsgkpdiayrffdhvryldafieqrgvtsaylvaqdwgtalafhlaarrpdfv
rglafmefirpmptwqdfhhtevaeeqdhaeaaravfrkfrtpgegeamileanafverv
lpggivrklgdeemapyrtpfptpesrrpvlafprelpiagepadvyealqsahaalaas
sypkllftgepgalvspefaerfaasltrcalirlgaglhylqedhadaigrsvagwiag
ieavrpqlaahhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3afiA (A:)
irrapvlgssmayretgaqdapvvlflhgnptsshiwrnilplvspvahciapdligfgq
sgkpdiayrffdhvryldafieqrgvtsaylvaqdwgtalafhlaarrpdfvrglafmef
irpmptwqdfhhtevaeeqdhaeaaravfrkfrtpgegeamileanafvervlpggivrk
lgdeemapyrtpfptpesrrpvlafprelpiagepadvyealqsahaalaassypkllft
gepgalvspefaerfaasltrcalirlgaglhylqedhadaigrsvagwiagieavrphh
h

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3afiB (B:)
mskpieieirrapvlgssmayretgaqdapvvlflhgnptsshiwrnilplvspvahcia
pdligfgqsgkpdiayrffdhvryldafieqrgvtsaylvaqdwgtalafhlaarrpdfv
rglafmefirpmptwqdfhhtevaeeqdhaeaaravfrkfrtpgegeamileanafverv
lpggivrklgdeemapyrtpfptpesrrpvlafprelpiagepadvyealqsahaalaas
sypkllftgepgalvspefaerfaasltrcalirlgaglhylqedhadaigrsvagwiag
ieavrpqlaahhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3afiB (B:)
eieirrapvlgssmayretgaqdapvvlflhgnptsshiwrnilplvspvahciapdlig
fgqsgkpdiayrffdhvryldafieqrgvtsaylvaqdwgtalafhlaarrpdfvrglaf
mefirpmptwqdfhhtevaeeqdhaeaaravfrkfrtpgegeamileanafvervlpggi
vrklgdeemapyrtpfptpesrrpvlafprelpiagepadvyealqsahaalaassypkl
lftgepgalvspefaerfaasltrcalirlgaglhylqedhadaigrsvagwiagieavh
hh

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3afiE (E:)
mskpieieirrapvlgssmayretgaqdapvvlflhgnptsshiwrnilplvspvahcia
pdligfgqsgkpdiayrffdhvryldafieqrgvtsaylvaqdwgtalafhlaarrpdfv
rglafmefirpmptwqdfhhtevaeeqdhaeaaravfrkfrtpgegeamileanafverv
lpggivrklgdeemapyrtpfptpesrrpvlafprelpiagepadvyealqsahaalaas
sypkllftgepgalvspefaerfaasltrcalirlgaglhylqedhadaigrsvagwiag
ieavrpqlaahhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3afiE (E:)
rrapvlgssmayretgaqdapvvlflhgnptsshiwrnilplvspvahciapdligfgqs
gkpdiayrffdhvryldafieqrgvtsaylvaqdwgtalafhlaarrpdfvrglafmefi
rpmptwqdfhhtevaeeqdhaeaaravfrkfrtpgegeamileanafvervlpggivrkl
gdeemapyrtpfptpesrrpvlafprelpiagepadvyealqsahaalaassypkllftg
epgalvspefaerfaasltrcalirlgaglhylqedhadaigrsvagwiagieavrpqhh
h

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3afiF (F:)
mskpieieirrapvlgssmayretgaqdapvvlflhgnptsshiwrnilplvspvahcia
pdligfgqsgkpdiayrffdhvryldafieqrgvtsaylvaqdwgtalafhlaarrpdfv
rglafmefirpmptwqdfhhtevaeeqdhaeaaravfrkfrtpgegeamileanafverv
lpggivrklgdeemapyrtpfptpesrrpvlafprelpiagepadvyealqsahaalaas
sypkllftgepgalvspefaerfaasltrcalirlgaglhylqedhadaigrsvagwiag
ieavrpqlaahhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3afiF (F:)
rrapvlgssmayretgaqdapvvlflhgnptsshiwrnilplvspvahciapdligfgqs
gkpdiayrffdhvryldafieqrgvtsaylvaqdwgtalafhlaarrpdfvrglafmefi
rpmptwqdfhhtevaeeqdhaeaaravfrkfrtpgegeamileanafvervlpggivrkl
gdeemapyrtpfptpesrrpvlafprelpiagepadvyealqsahaalaassypkllftg
epgalvspefaerfaasltrcalirlgaglhylqedhadaigrsvagwiagieavrphhh