PDB entry 3afg

View 3afg on RCSB PDB site
Description: crystal structure of pron-tk-sp from thermococcus kodakaraensis
Deposited on 2010-03-01, released 2010-08-04
The last revision was dated 2021-11-10, with a file datestamp of 2021-11-05.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.184
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: subtilisin-like serine protease
    Species: Thermococcus kodakarensis [TaxId:311400]
    Gene: TK1689
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5JIZ5 (0-538)
      • engineered mutation (358)
  • Chain 'B':
    Compound: subtilisin-like serine protease
    Species: Thermococcus kodakarensis [TaxId:311400]
    Gene: TK1689
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5JIZ5 (0-538)
      • engineered mutation (358)
  • Heterogens: CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3afgA (A:)
apqkpavrnvsqqknyglltpglfkkvqrmswdqevstiimfdnqadkekaveildflga
kikynyhiipalavkikvkdlliiaglmdtgyfgnaqlsgvqfiqedyvvkvavetegld
esaaqvmatnmwnlgydgsgitigiidtgidashpdlqgkvigwvdfvngkttpyddngh
gthvasiaagtgaasngkykgmapgaklvgikvlngqgsgsisdiingvdwavqnkdkyg
ikvinlslgssqssdgtdslsqavnnawdaglvvvvaagnsgpnkytvgspaaaskvitv
gavdkydvitdfssrgptadnrlkpevvapgnwiiaarasgtsmgqpindyytaapgtam
atphvagiaalllqahpswtpdkvktalietadivkpdeiadiaygagrvnaykaayydn
yakltftgyvsnkgsqshqftisgagfvtatlywdnsgsdldlylydpngnqvdysytay
ygfekvgyynptagtwtikvvsysgsanyqvdvvsdgslgqpsgggsepspspspeptv

    Sequence, based on observed residues (ATOM records):
    >3afgA (A:)
kpavrnvsqqknyglltpglfkkvqrmswdqevstiimfdnqadkekaveildflgakik
ynyhiipalavkikvkdlliiaglmdtgnaqlsgvqfiqedyvvkvaqvmatnmwnlgyd
gsgitigiidtgidashpdlqgkvigwvdfvngkttpyddnghgthvasiaagtgaasng
kykgmapgaklvgikvlngqgsgsisdiingvdwavqnkdkygikvinlslgssqssdgt
dslsqavnnawdaglvvvvaagnsgpnkytvgspaaaskvitvgavdkydvitdfssrgp
tadnrlkpevvapgnwiiaarasgtsmgqpindyytaapgtamatphvagiaalllqahp
swtpdkvktalietadivkpdeiadiaygagrvnaykaayydnyakltftgyvsnkgsqs
hqftisgagfvtatlywdnsgsdldlylydpngnqvdysytayygfekvgyynptagtwt
ikvvsysgsanyqvdvvsdgslgqp

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3afgB (B:)
apqkpavrnvsqqknyglltpglfkkvqrmswdqevstiimfdnqadkekaveildflga
kikynyhiipalavkikvkdlliiaglmdtgyfgnaqlsgvqfiqedyvvkvavetegld
esaaqvmatnmwnlgydgsgitigiidtgidashpdlqgkvigwvdfvngkttpyddngh
gthvasiaagtgaasngkykgmapgaklvgikvlngqgsgsisdiingvdwavqnkdkyg
ikvinlslgssqssdgtdslsqavnnawdaglvvvvaagnsgpnkytvgspaaaskvitv
gavdkydvitdfssrgptadnrlkpevvapgnwiiaarasgtsmgqpindyytaapgtam
atphvagiaalllqahpswtpdkvktalietadivkpdeiadiaygagrvnaykaayydn
yakltftgyvsnkgsqshqftisgagfvtatlywdnsgsdldlylydpngnqvdysytay
ygfekvgyynptagtwtikvvsysgsanyqvdvvsdgslgqpsgggsepspspspeptv

    Sequence, based on observed residues (ATOM records):
    >3afgB (B:)
kpavrnvsqqknyglltpglfkkvqrmswdqevstiimfdnqadkekaveildflgakik
ynyhiipalavkikvkdlliiaglmdaqlsgvqfiqedyvvkvavetaaqvmatnmwnlg
ydgsgitigiidtgidashpdlqgkvigwvdfvngkttpyddnghgthvasiaagtgaas
ngkykgmapgaklvgikvlngqgsgsisdiingvdwavqnkdkygikvinlslgssqssd
gtdslsqavnnawdaglvvvvaagnsgpnkytvgspaaaskvitvgavdkydvitdfssr
gptadnrlkpevvapgnwiiaarasgtsmgqpindyytaapgtamatphvagiaalllqa
hpswtpdkvktalietadivkpdeiadiaygagrvnaykaayydnyakltftgyvsnkgs
qshqftisgagfvtatlywdnsgsdldlylydpngnqvdysytayygfekvgyynptagt
wtikvvsysgsanyqvdvvsdgslgqp