PDB entry 3afc

View 3afc on RCSB PDB site
Description: mouse semaphorin 6a extracellular domain
Deposited on 2010-02-26, released 2010-10-06
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Semaphorin-6A
    Species: Mus musculus [TaxId:10090]
    Gene: Sema6a, Semaq
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Semaphorin-6A
    Species: Mus musculus [TaxId:10090]
    Gene: Sema6a, Semaq
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3afcA (A:)
gssrgfpedsepisishgnytkqypvfvghkpgrnttqrhrldiqmimimnrtlyvaard
hiytvdidtshteeiycskkltwksrqadvdtcrmkgkhkdechnfikvllkknddtlfv
cgtnafnpscrnyrvdtletfgdefsgmarcpydakhanialfadgklysatvtdflaid
aviyrslgdsptlrtvkhdskwlkepyfvqavdygdyiyfffreiaveyntmgkvvfprv
aqvckndmggsqrvlekqwtsflkarlncsvpgdshfyfnilqavtdviringrdvvlat
fstpynsipgsavcaydmldianvftgrfkeqkspdstwtpvpdervpkprpgccagsss
lekyatsnefpddtlnfikthplmdeavpsiinrpwflrtmvryrltkiavdnaagpyqn
htvvflgsekgiilkflarigssgflngslfleemnvynpekcsydgvedkrimgmqldr
asgslyvafstcvikvplgrcerhgkckktciasrdpycgwvresgscahlsplsrltfe
qdiergntdglgdchn

    Sequence, based on observed residues (ATOM records):
    >3afcA (A:)
gfpedsepisishgnytkqypvfvghkhrldiqmimimnrtlyvaardhiytvdidtsht
eeiycskkltwksrqadvdtcrmkgkhkdechnfikvllkknddtlfvcgtnafnpscrn
yrvdtletfgdefsgmarcpydakhanialfadgklysatvtdflaidaviyrslgdspt
lrtvkhdskwlkepyfvqavdygdyiyfffreiaveyntmgkvvfprvaqvckndmggsq
rvlekqwtsflkarlncsvpgdshfyfnilqavtdviringrdvvlatfstpynsipgsa
vcaydmldianvftgrfkeqkspdstwtpvpdervpkprpgccagssslekyatsnefpd
dtlnfikthplmdeavpsiinrpwflrtmvryrltkiavdnaagpyqnhtvvflgsekgi
ilkflargslfleemnvynpekcsydgvedkrimgmqldrasgslyvafstcvikvplgr
cerhgkckktciasrdpycgwvresgscahlsplsrltfeqdiergntdglgdc

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3afcB (B:)
gssrgfpedsepisishgnytkqypvfvghkpgrnttqrhrldiqmimimnrtlyvaard
hiytvdidtshteeiycskkltwksrqadvdtcrmkgkhkdechnfikvllkknddtlfv
cgtnafnpscrnyrvdtletfgdefsgmarcpydakhanialfadgklysatvtdflaid
aviyrslgdsptlrtvkhdskwlkepyfvqavdygdyiyfffreiaveyntmgkvvfprv
aqvckndmggsqrvlekqwtsflkarlncsvpgdshfyfnilqavtdviringrdvvlat
fstpynsipgsavcaydmldianvftgrfkeqkspdstwtpvpdervpkprpgccagsss
lekyatsnefpddtlnfikthplmdeavpsiinrpwflrtmvryrltkiavdnaagpyqn
htvvflgsekgiilkflarigssgflngslfleemnvynpekcsydgvedkrimgmqldr
asgslyvafstcvikvplgrcerhgkckktciasrdpycgwvresgscahlsplsrltfe
qdiergntdglgdchn

    Sequence, based on observed residues (ATOM records):
    >3afcB (B:)
gfpedsepisishgnytkqypvfvgrldiqmimimnrtlyvaardhiytvdideiycskk
ltwksrqadvdtcrmkgkhkdechnfikvllkknddtlfvcgtnafnpscrnyrvdtlet
fgdefsgmarcpydakhanialfadgklysatvtdflaidaviyrslgdsptlrtvkhds
kwlkepyfvqavdygdyiyfffreiaveyntmgkvvfprvaqvckndmggsqrvlekqwt
sflkarlncsvpgdshfyfnilqavtdviringrdvvlatfstpynsipgsavcaydmld
ianvftgrfkeqkspdstwtpvpdervpkprpgccagssslekyatsnefpddtlnfikt
hplmdeavpsiinrpwflrtmvryrltkiavdnaagpyqnhtvvflgsekgiilkflari
gssgflngslfleemnvynpekcsydgvedkrimgmqldrasgslyvafstcvikvplgr
cerktciasrdpyceqdie