PDB entry 3af6

View 3af6 on RCSB PDB site
Description: The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii complexed with RNA-analog
Deposited on 2010-02-24, released 2010-04-21
The last revision was dated 2010-06-30, with a file datestamp of 2010-06-25.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.22
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative uncharacterized protein PH1404
    Species: Pyrococcus horikoshii [TaxId:70601]
    Gene: PH1404
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: 5'-r(*(ssu)p*(ssu)p*(ssu)p*(ssu)p*(ssu)p*(ssu))-3'
  • Chain 'C':
    Compound: 5'-r(*(ssu)p*(ssu)p*(ssu)p*(ssu)p*(ssu)p*(ssu))-3'
  • Heterogens: SO4, ZN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3af6A (A:)
    mtflikretqvdqilrdiravvnqmvpkeakiteiefegpelviyvknpeaimkdgelik
    dlakvlkkrisvrpdpevllppeeaeklifeivpkeaeitniafdpsvgevlieakkpgl
    vigkngetlrlitqkvkwapkvvrtpplqsqtiysirqilqteskdrrkflrqvgrniyr
    kpeyksrwiritglggfrevgrsallvqtdesfvlvdfgvnvamlndpykafphfdapef
    qyvlreglldaiiithahldhcgmlpylfrynlfdgpiyttpptrdlmvllqkdfieiqq
    sngqdplyrprdikevikhtitldygevrdispdirltlhnaghilgsaivhlhignglh
    niaitgdfkfiptrllepanakfprletlvmestyggandiqmpreeaekrlievihnti
    krggkvlipamavgraqevmmvleeyariggievpiyldgmiweataihtaypeylsrrl
    reqifkegynpflseifhpvansrerqdiidsnepaiiiassgmlvggpsveyfkqlapd
    pknsiifvsyqaegtlgrqvqsgireipmvgeegrtevikvnmevhtidgfsghadrrel
    mnyvakvrprperiitvhgepqkcldlatsihrkfgistrapnnldtirlr
    

    Sequence, based on observed residues (ATOM records):
    >3af6A (A:)
    tqvdqilrdiravvnqmvpkeakiteiefegpelviyvknpeelikdlakvlkkrisvrp
    dpevllppeeaeklifeivpkeaeitniafdpsvgevlieakkpglvigkngetlrlitq
    kvkwapkvvrtpplqsqtiysirqilqteskdrrkflrqvgrniyrkpeyksrwiritgl
    ggfrevgrsallvqtdesfvlvdfgvnvamlndpykafphfdapefqyvlreglldaiii
    thahldhcgmlpylfrynlfdgpiyttpptrdlmvllqkdfieiqqsngqdplyrprdik
    evikhtitldygevrdispdirltlhnaghilgsaivhlhignglhniaitgdfkfiptr
    llepanakfprletlvmestyggandiqmpreeaekrlievihntikrggkvlipamavg
    raqevmmvleeyariggievpiyldgmiweataihtaypeylsrrlreqifkegynpfls
    eifhpvansrerqdiidsnepaiiiassgmlvggpsveyfkqlapdpknsiifvsyqaeg
    tlgrqvqsgireipmvgeegrtevikvnmevhtidgfsghadrrelmnyvakvrprperi
    itvhgepqkcldlatsihrkfgistrapnnldtirlr
    

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.