PDB entry 3add

View 3add on RCSB PDB site
Description: Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 3)
Deposited on 2010-01-18, released 2010-07-28
The last revision was dated 2010-09-01, with a file datestamp of 2010-08-27.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.218
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: L-seryl-tRNA(Sec) kinase
    Species: Methanocaldococcus jannaschii [TaxId:243232]
    Gene: MJ1538
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q58933 (11-258)
      • expression tag (8-10)
  • Chain 'B':
    Compound: L-seryl-tRNA(Sec) kinase
    Species: Methanocaldococcus jannaschii [TaxId:243232]
    Gene: MJ1538
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q58933 (11-258)
      • expression tag (9-10)
  • Chain 'C':
    Compound: selenocysteine tRNA
    Species: Methanopyrus kandleri, synthetic [TaxId:2320]
  • Chain 'D':
    Compound: selenocysteine tRNA
    Species: Methanopyrus kandleri, synthetic [TaxId:2320]
  • Heterogens: ANP, MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3addA (A:)
mnhkvhhhhhhmliiltglpgvgkstfsknlakilsknnidvivlgsdliresfpvwkek
yeefikkstyrlidsalknywvivddtnyynsmrrdliniakkynknyaiiylkasldvl
irrniergekipnevikkmyekfdepgkkykwdepfliidttkdidfneiakkliekske
ipkfyvleenknknnnisdkidketrkivseyikskkldkdkikevvelrkeflkkikkm
eevdadrvlkefkdllnsy

    Sequence, based on observed residues (ATOM records):
    >3addA (A:)
hhhmliiltglpgvgkstfsknlakilsknnidvivlgsdliresfpvwkekyeefikks
tyrlidsalknywvivddtnyynsmrrdliniakkynknyaiiylkasldvlirrnierg
ekipnevikkmyekfdepgkkykwdepfliidttkdidfneiakkliekskeipkfyvle
enknknnnisdkidketrkivseyikskkldkdkikevvelrkeflkkikkmeevdadrv
lkefkdllnsy

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3addB (B:)
mnhkvhhhhhhmliiltglpgvgkstfsknlakilsknnidvivlgsdliresfpvwkek
yeefikkstyrlidsalknywvivddtnyynsmrrdliniakkynknyaiiylkasldvl
irrniergekipnevikkmyekfdepgkkykwdepfliidttkdidfneiakkliekske
ipkfyvleenknknnnisdkidketrkivseyikskkldkdkikevvelrkeflkkikkm
eevdadrvlkefkdllnsy

    Sequence, based on observed residues (ATOM records):
    >3addB (B:)
hhmliiltglpgvgkstfsknlakilsknnidvivlgsdliresfpvwkekyeefikkst
yrlidsalknywvivddtnyynsmrrdliniakkynknyaiiylkasldvlirrnierge
kipnevikkmyekfdepgkkykwdepfliidttkdidfneiakkliekskeipkfnisdk
idketrkivseyikskkldkdkikevvelrkeflkkikkmeevdadrvlkefkdllnsy

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.