PDB entry 3ad8

View 3ad8 on RCSB PDB site
Description: Heterotetrameric Sarcosine Oxidase from Corynebacterium sp. U-96 in complex with pyrrole 2-carboxylate
Deposited on 2010-01-15, released 2010-08-25
The last revision was dated 2013-09-04, with a file datestamp of 2013-08-30.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.163
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Sarcosine oxidase alpha subunit
    Species: Corynebacterium sp. U-96 [TaxId:31944]
    Gene: soxA
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Sarcosine oxidase beta subunit
    Species: Corynebacterium sp. U-96 [TaxId:31944]
    Gene: soxB
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Sarcosine oxidase gamma subunit
    Species: Corynebacterium sp. U-96 [TaxId:31944]
    Gene: soxG
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Sarcosine oxidase delta subunit
    Species: Corynebacterium sp. U-96 [TaxId:31944]
    Gene: soxD
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAD, SO4, FAD, FMN, PYC, ZN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3ad8A (A:)
skpqrlsaaqtagarinrdealtltvdgqqlsafrgdtvasamlanglrscgnsmyldrp
rgifsagveepnalitvgarhqadinesmlpattvsvtdglnatllsglgvldpsedpay
ydhvhvhtdvlvvgagpaglaaareasrsgarvmllderpeaggtlreasgeqidgidaa
qwidavteelaaaeetthlqrttvfgsydanyilaaqrrtvhldgpsgqgvsreriwhir
akqvvlataaherpivfenndrpgimlagsvrsylnrfgvragskiavattndsvyplvs
elaasggvvavidarqnisaaaaqavtdgvtvltgsvvanteadasgelsavlvatldeq
rnlgeaqrfeadvlavsggfnpvvhlhsqrqgklnwdtsihafvpadavanqhlagaltg
lldtasalstgaatgaaaasaagfekiaevpqalavpagetrpvwlvpslsgddavhykf
hfvdlqrdqtvadvlratgagmqsvehikrytsistandqgktsgvaaigviaavlgien
paqigtttfrapytpvsfaalagrtrgelldparltamhpwhlahgakfedvgqwkrpwy
ypqdgesmdeavyreckavrdsvgmldastlgkieirgkdaaeflnrmytngytklkvgm
grygvmckadgmifddgvtlrlaedrflmhtttggaadvldwleewlqtewpeldvtcts
vteqlatvavvgprsrdviaklassldvsndafkfmafqdvtldsgiearisrisfsgel
afeiaipawhglqvwedvyaagqefnitpygtetmhvlraekgfiivgqdtdgtvtpqda
gmewvvsklkdfvgkrsfsrednvredrkhlvsvlpvdsslrlaegaalvaadavasegv
tpmegwvthaynspalgrtfglalikngrnrigevlktpvdgqlvdvqvsdlvlfdpegs
rrdg

    Sequence, based on observed residues (ATOM records):
    >3ad8A (A:)
skpqrlsaaqtagarinrdealtltvdgqqlsafrgdtvasamlanglrscgnsmyldrp
rgifsagveepnalitvgarhqadinesmlpattvsvtdglnatllsglgvldpsedpay
ydhvhvhtdvlvvgagpaglaaareasrsgarvmllderpeaggtlreasgeqidgidaa
qwidavteelaaaeetthlqrttvfgsydanyilaaqrrtvhldgpsgqgvsreriwhir
akqvvlataaherpivfenndrpgimlagsvrsylnrfgvragskiavattndsvyplvs
elaasggvvavidarqnisaaaaqavtdgvtvltgsvvanteadasgelsavlvatldeq
rnlgeaqrfeadvlavsggfnpvvhlhsqrqgklnwdtsihafvpadavanqhlagaltg
lldtasalstgaatgaaaasaagfekiaevpqalavpagetrpvwlvpslsgddavhykf
hfvdlqrdqtvadvlratgagmqsvehikrytsistandqgktsgvaaigviaavlgien
paqigtttfrapytpvsfaalagrtrgelldparltamhpwhlahgakfedvgqwkrpwy
ypqdgesmdeavyreckavrdsvgmldastlgkieirgkdaaeflnrmytngytklkvgm
grygvmckadgmifddgvtlrlaedrflmhtttggaadvldwleewlqtewpeldvtcts
vteqlatvavvgprsrdviaklassldvsndafkfmafqdvtldsgiearisrisfsgel
afeiaipawhglqvwedvyaagqefnitpygtetmhvlraekgfiivgqdtdgtvtpqda
gmewvvsklkdfvgkrsfsrednvredrkhlvsvlpvdsslrlaegaalvaadavasegv
tpmegwvthaynspalgrtfglalikngrnrigevlktpvdgqlvdvqvsdlvlfdpegs
rrd

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >3ad8B (B:)
adllpehpeflwnnpepkksydvvivgggghglatayylaknhgitnvavlekgwlaggn
marnttiirsnylwdesagiyekslklweelpeeleydflfsqrgvlnlahtlgdvresi
rrveankfngvdaewltpeqvkevcpiintgdnirypvmgatyqpragiakhdhvawafa
rkanemgvdiiqncevtgflkdgekvtgvkttrgtilagkvalagaghssvlaelagfel
piqshplqalvselfepvhptvvmsnhihvyvsqahkgelvmgagidsyngygqrgafhv
ieeqmaaavelfpifarahvlrtwggivdttmdaspiisktpiqnlyvncgwgtggfkgt
pgagytlahtiahdephklnapfalerfetghlidehgaaavah

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3ad8C (C:)
qlrrspaahlaaameaaevageravtlrevafttqlglravpgstghaalaaatgvglpa
avgevagdvsgtavlwlgpdefllaaeenpalldtlqgalgqepgqvldlsanrsvlqle
gpaaalvlrkscpadlhprefgvnraittslanipvllwrtgeqswrilprasftehtvh
wlidamsefsaaevalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >3ad8C (C:)
qlrrspaahlaaameaaevageravtlrevafttqlglravpgstghaalaaatgvglpa
avgevagdvsgtavlwlgpdefllaaeenpalldtlqgalgqepgqvldlsanrsvlqle
gpaaalvlrkscpadlhprefgvnraittslanipvllwrtgeqswrilprasftehtvh
wlidamsefsaaeva

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3ad8D (D:)
mmliecpncgprnenefkyggeahvaypedpnalsdkewsrylfyrgnkkgifaerwvhs
ggcrkwfnalrdtvsyefkavyragearpqldsteggtr

    Sequence, based on observed residues (ATOM records):
    >3ad8D (D:)
mmliecpncgprnenefkyggeahvaypedpnalsdkewsrylfyrgnkkgifaerwvhs
ggcrkwfnalrdtvsyefkavyragearpql