PDB entry 3a9c

View 3a9c on RCSB PDB site
Description: Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakaraensis KOD1 in complex with ribulose-1,5-bisphosphate
Deposited on 2009-10-22, released 2010-11-03
The last revision was dated 2013-06-12, with a file datestamp of 2013-06-07.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.201
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Translation initiation factor eIF-2B, delta subunit
    Species: Thermococcus kodakarensis [TaxId:311400]
    Gene: E2b2
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5JFM9 (Start-337)
      • microheterogeneity (148)
  • Chain 'B':
    Compound: Translation initiation factor eIF-2B, delta subunit
    Species: Thermococcus kodakarensis [TaxId:311400]
    Gene: E2b2
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5JFM9 (16-337)
      • expression tag (10-15)
      • microheterogeneity (148)
  • Chain 'C':
    Compound: Translation initiation factor eIF-2B, delta subunit
    Species: Thermococcus kodakarensis [TaxId:311400]
    Gene: E2b2
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5JFM9 (Start-337)
      • microheterogeneity (148)
  • Chain 'D':
    Compound: Translation initiation factor eIF-2B, delta subunit
    Species: Thermococcus kodakarensis [TaxId:311400]
    Gene: E2b2
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5JFM9 (16-337)
      • microheterogeneity (148)
  • Chain 'E':
    Compound: Translation initiation factor eIF-2B, delta subunit
    Species: Thermococcus kodakarensis [TaxId:311400]
    Gene: E2b2
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5JFM9 (Start-337)
      • microheterogeneity (148)
  • Chain 'F':
    Compound: Translation initiation factor eIF-2B, delta subunit
    Species: Thermococcus kodakarensis [TaxId:311400]
    Gene: E2b2
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5JFM9 (16-337)
      • microheterogeneity (148)
  • Heterogens: RUB, PEG, MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3a9cA (A:)
mnhkvhhhhhhiegrhmavvkevleiaekiknmeirgagkiarsaayalqlqaekskatn
vdefwkemkqaakilfetrptavslpnalryvmhrgkiayssgadleqlrfviinaakef
ihnsekalerigefgakriedgdvimthchskaaisvmktaweqgkdikvivtetrpkwq
gkitakelasygipviyvvdsaarhymkmtdkvvmgadsitvngavinkigtalialtak
ehrvwtmiaaetykfhpetmlgqlveiemrdptevipedelktwpknievwnpafdvtpp
eyvdviitergiippyaaidilreefgwalkytepwed

    Sequence, based on observed residues (ATOM records):
    >3a9cA (A:)
vvkevleiaekiknmeirgagkiarsaayalqlqaekskatnvdefwkemkqaakilfet
rptavslpnalryvmhrgkiayssgadleqlrfviinaakefihnsekalerigefgakr
iedgdvimthchskaaisvmktaweqgkdikvivtetrpkwqgkitakelasygipviyv
vdsaarhymkmtdkvvmgadsitvngavinkigtalialtakehrvwtmiaaetykfhpe
tmlgqlveiemrdptevipedelktwpknievwnpafdvtppeyvdviitergiippyaa
idilreefgwalkytepwed

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3a9cB (B:)
mnhkvhhhhhhiegrhmavvkevleiaekiknmeirgagkiarsaayalqlqaekskatn
vdefwkemkqaakilfetrptavslpnalryvmhrgkiayssgadleqlrfviinaakef
ihnsekalerigefgakriedgdvimthchskaaisvmktaweqgkdikvivtetrpkwq
gkitakelasygipviyvvdsaarhymkmtdkvvmgadsitvngavinkigtalialtak
ehrvwtmiaaetykfhpetmlgqlveiemrdptevipedelktwpknievwnpafdvtpp
eyvdviitergiippyaaidilreefgwalkytepwed

    Sequence, based on observed residues (ATOM records):
    >3a9cB (B:)
hiegrhmavvkevleiaekiknmeirgagkiarsaayalqlqaekskatnvdefwkemkq
aakilfetrptavslpnalryvmhrgkiayssgadleqlrfviinaakefihnsekaler
igefgakriedgdvimthchskaaisvmktaweqgkdikvivtetrpkwqgkitakelas
ygipviyvvdsaarhymkmtdkvvmgadsitvngavinkigtalialtakehrvwtmiaa
etykfhpetmlveiemrdptevipedelktwpknievwnpafdvtppeyvdviitergii
ppyaaidilreefgwalkytepwed

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3a9cC (C:)
mnhkvhhhhhhiegrhmavvkevleiaekiknmeirgagkiarsaayalqlqaekskatn
vdefwkemkqaakilfetrptavslpnalryvmhrgkiayssgadleqlrfviinaakef
ihnsekalerigefgakriedgdvimthchskaaisvmktaweqgkdikvivtetrpkwq
gkitakelasygipviyvvdsaarhymkmtdkvvmgadsitvngavinkigtalialtak
ehrvwtmiaaetykfhpetmlgqlveiemrdptevipedelktwpknievwnpafdvtpp
eyvdviitergiippyaaidilreefgwalkytepwed

    Sequence, based on observed residues (ATOM records):
    >3a9cC (C:)
avvkevleiaekiknmeirgagkiarsaayalqlqaekskatnvdefwkemkqaakilfe
trptavslpnalryvmhrgkiayssgadleqlrfviinaakefihnsekalerigefgak
riedgdvimthchskaaisvmktaweqgkdikvivtetrpkwqgkitakelasygipviy
vvdsaarhymkmtdkvvmgadsitvngavinkigtalialtakehrvwtmiaaetykfhp
etmlgqlveiemrdptevipedelktwpknievwnpafdvtppeyvdviitergiippya
aidilreefgwalkytepwed

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3a9cD (D:)
mnhkvhhhhhhiegrhmavvkevleiaekiknmeirgagkiarsaayalqlqaekskatn
vdefwkemkqaakilfetrptavslpnalryvmhrgkiayssgadleqlrfviinaakef
ihnsekalerigefgakriedgdvimthchskaaisvmktaweqgkdikvivtetrpkwq
gkitakelasygipviyvvdsaarhymkmtdkvvmgadsitvngavinkigtalialtak
ehrvwtmiaaetykfhpetmlgqlveiemrdptevipedelktwpknievwnpafdvtpp
eyvdviitergiippyaaidilreefgwalkytepwed

    Sequence, based on observed residues (ATOM records):
    >3a9cD (D:)
mavvkevleiaekiknmeirgagkiarsaayalqlqaekskatnvdefwkemkqaakilf
etrptavslpnalryvmhrgkiayssgadleqlrfviinaakefihnsekalerigefga
kriedgdvimthchskaaisvmktaweqgkdikvivtetrpkwqgkitakelasygipvi
yvvdsaarhymkmtdkvvmgadsitvngavinkigtalialtakehrvwtmiaaetykfh
petmlgqlveiemrdptevipedelktwpknievwnpafdvtppeyvdviitergiippy
aaidilreefgwalkytepwed

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3a9cE (E:)
mnhkvhhhhhhiegrhmavvkevleiaekiknmeirgagkiarsaayalqlqaekskatn
vdefwkemkqaakilfetrptavslpnalryvmhrgkiayssgadleqlrfviinaakef
ihnsekalerigefgakriedgdvimthchskaaisvmktaweqgkdikvivtetrpkwq
gkitakelasygipviyvvdsaarhymkmtdkvvmgadsitvngavinkigtalialtak
ehrvwtmiaaetykfhpetmlgqlveiemrdptevipedelktwpknievwnpafdvtpp
eyvdviitergiippyaaidilreefgwalkytepwed

    Sequence, based on observed residues (ATOM records):
    >3a9cE (E:)
avvkevleiaekiknmeirgagkiarsaayalqlqaekskatnvdefwkemkqaakilfe
trptavslpnalryvmhrgkiayssgadleqlrfviinaakefihnsekalerigefgak
riedgdvimthchskaaisvmktaweqgkdikvivtetrpkwqgkitakelasygipviy
vvdsaarhymkmtdkvvmgadsitvngavinkigtalialtakehrvwtmiaaetykfhp
etmlgqlveiemrdptevipedelktwpknievwnpafdvtppeyvdviitergiippya
aidilreefgwalkytepwed

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3a9cF (F:)
mnhkvhhhhhhiegrhmavvkevleiaekiknmeirgagkiarsaayalqlqaekskatn
vdefwkemkqaakilfetrptavslpnalryvmhrgkiayssgadleqlrfviinaakef
ihnsekalerigefgakriedgdvimthchskaaisvmktaweqgkdikvivtetrpkwq
gkitakelasygipviyvvdsaarhymkmtdkvvmgadsitvngavinkigtalialtak
ehrvwtmiaaetykfhpetmlgqlveiemrdptevipedelktwpknievwnpafdvtpp
eyvdviitergiippyaaidilreefgwalkytepwed

    Sequence, based on observed residues (ATOM records):
    >3a9cF (F:)
mavvkevleiaekiknmeirgagkiarsaayalqlqaekskatnvdefwkemkqaakilf
etrptavslpnalryvmhrgkiayssgadleqlrfviinaakefihnsekalerigefga
kriedgdvimthchskaaisvmktaweqgkdikvivtetrpkwqgkitakelasygipvi
yvvdsaarhymkmtdkvvmgadsitvngavinkigtalialtakehrvwtmiaaetykfh
petmlgqlveiemrdptevipedelktwpknievwnpafdvtppeyvdviitergiippy
aaidilreefgwalkytepwed