PDB entry 3a4s
View 3a4s on RCSB PDB site
Description: The crystal structure of the SLD2:Ubc9 complex
Class: ligase/trnascription
Keywords: ubiquitin fold, SUMO, Coiled coil, Cytoplasm, Methylation, Nucleus, ATP-binding, Cell cycle, Cell division, Chromosome partition, Host-virus interaction, Isopeptide bond, Ligase, Mitosis, Nucleotide-binding, Ubl conjugation, Ubl conjugation pathway, LIGASE-TRNASCRIPTION COMPLEX
Deposited on
2009-07-14, released
2010-02-02
The last revision prior to the SCOPe 2.04 freeze date was dated
2010-03-23, with a file datestamp of
2010-03-19.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.227
AEROSPACI score: 0.26
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: SUMO-conjugating enzyme UBC9
Species: Homo sapiens [TaxId:9606]
Gene: UBC9
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3a4sa_ - Chain 'B':
Compound: SUMO-conjugating enzyme UBC9
Species: Homo sapiens [TaxId:9606]
Gene: UBC9
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3a4sb_ - Chain 'C':
Compound: NFATC2-interacting protein
Species: Mus musculus [TaxId:10090]
Gene: Nip45
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3a4sc_ - Chain 'D':
Compound: NFATC2-interacting protein
Species: Mus musculus [TaxId:10090]
Gene: Nip45
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3a4sd_
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3a4sA (A:)
gplgsmsgialsrlaqerkawrkdhpfgfvavptknpdgtmnlmnwecaipgkkgtpweg
glfklrmlfkddypssppkckfepplfhpnvypsgtvclsileedkdwrpaitikqillg
iqellnepniqdpaqaeaytiycqnrveyekrvraqakkfaps
Sequence, based on observed residues (ATOM records): (download)
>3a4sA (A:)
gialsrlaqerkawrkdhpfgfvavptkpdgtmnlmnwecaipgkkgtpwegglfklrml
fkddypssppkckfepplfhpnvypsgtvclsileedkdwrpaitikqillgiqellnep
niqdpaqaeaytiycqnrveyekrvraqakkfaps
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3a4sB (B:)
gplgsmsgialsrlaqerkawrkdhpfgfvavptknpdgtmnlmnwecaipgkkgtpweg
glfklrmlfkddypssppkckfepplfhpnvypsgtvclsileedkdwrpaitikqillg
iqellnepniqdpaqaeaytiycqnrveyekrvraqakkfaps
Sequence, based on observed residues (ATOM records): (download)
>3a4sB (B:)
smsgialsrlaqerkawrkdhpfgfvavptktmnlmnwecaipgkkgtpwegglfklrml
fkddypssppkckfepplfhpnvypsgtvclsileedkdwrpaitikqillgiqellnep
niqdpaqaeaytiycqnrveyekrvraqakkfaps
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3a4sC (C:)
gplgsqelrlrvqgkekhqmleislspdsplkvlmshyeeamglsghklsfffdgtklsg
kelpadlglesgdlievwg
Sequence, based on observed residues (ATOM records): (download)
>3a4sC (C:)
qelrlrvqgkekhqmleislspdsplkvlmshyeeamglsghklsfffdgtklsgkelpa
dlglesgdlievwg
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3a4sD (D:)
gplgsqelrlrvqgkekhqmleislspdsplkvlmshyeeamglsghklsfffdgtklsg
kelpadlglesgdlievwg
Sequence, based on observed residues (ATOM records): (download)
>3a4sD (D:)
elrlrvqgkekhqmleislspsplkvlmshyeealsfffdgtklsgkelpaglesgdlie
vw